BAC Information

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BAC

Clone NameMSMg01-356E12
Chromosome6 (Build37)
Map Location 112,359,557 - 112,359,905
singlet/doubletsinglet
Overlap genenone
Upstream geneGrm7, 1700054K19Rik, Lmcd1, D630042P16Rik, LOC619975
Downstream geneCav3, Oxtr, LOC434076, EG434077, Rad18, Srgap3, EG666387, EG620161, LOC666397, Thumpd3, EG434078, Setd5, Lhfpl4, Mtmr14, Cpne9, Brpf1, Ogg1, Camk1, Tada3l, Arpc4, Ttll3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356E12.T7 (MSMg01no356_e12.b1)MSMg01-356E12.TJ (MSMg01no356_e12.g1)
ACCAG466461AG466462
length752797
length of high quality
(start - end)
484 (44 - 527)349 (74 - 422)
definitionCHROMAT_FILE: MSMg01no356_e12.b1 PHD_FILE: MSMg01no356_e12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:58 2005CHROMAT_FILE: MSMg01no356_e12.g1 PHD_FILE: MSMg01no356_e12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTATCATATCCTCAAAGAAGACCTAATTCTAGTTCTCCTCAAACTAGT
CCACAAAATAGAAACAGAAGGTAGTCTACCCAAGTTTTTCTATGAAGCCA
CAATTACTCTGATGCCTAAACCACATAAAGACCCAACAAACATAAAGAAC
TTCAGACCAATTTCCCTTATAAATATCGATGCAAAAATACTCAATAAATT
TCTTGCTAACTGAATCCAAGAACTCATCAAAACAATCATCCATCATGATC
AAGTAGGCTTCATTCCAGGGATGATTGGATGGTTTAATATATGGAAATCC
ATCAGTGTAATCCACTATATAAATAAACTCAAAGACAAAAACCACATGAT
CATCTCGTTAGATGCTGAGAAAGCATTTGACAAAGTCCAACACCCATTCA
TGATAAAAGTCTTGGAAAGATCAGGATTCAAGGCCCATACCTAAACATAA
TAAAAGCAATATACAGCAAACCAGTAGCCTACATCAAACTAAATAGAGAG
GAGATGGAAGCAATCCCAGTAACATCAGGGACTACACTAGGTTGCCCACT
TTCTCCCTACCTATTCTACATAGTACTTGAAGTTCTAGCCTGAGCAATTA
AACCACCAAAGGATGTCTAGGCGATACATATTGGTTAGTACAAATCCAAA
TATTTCCTTTTTGTTTACGCAACTTTTCTACCTTTTAACTGATTCCTCTA
TN
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAATGTTCTTTTCAGCCAGAATATTGA
CTTAGTCTGTTTGCTGCTGCTATGACTGCTGTCCGAGACTGCATAATTTA
TGAGGAAAGAAGTTTAAATGATTACACATGGTTACACATTATCGGGCAGC
TGCATCTGGCAAGGCACTAGTACCTGTTTTCATAACAGGAAGCAGGAAGG
AAAGAGAAAGCATTCCTATAGGGAGAAATGAACCTTTGCCAGGTCTAATC
TTTAGGACTCAGCCTCCATGATCTTCTCCTCCACACCCCTGCCCTCAGTC
TCTCACTAGGCTCCCACCACTCCTCCATGGAGGACTCACAATTCCATCTT
ATGAACTCTTGATAGCAGCTTCATACCACAACATTATTGGATGAGAGGGC
ATAAGCACTTACCAAGTCTAAGCACTAACAGATGTTTATTCCTCCCGCAC
TGCCCCTATGCATAAAGGTGGTCTTGTCTTTTCTCACCCTATGTTACTTC
TCAGAATCGTATTCTATTTCTCTCCCCGCTTCCCTTTTCTCTCCTGTCTT
ATGTTTTTCATTGTTCTCCTCGGATCCCCTCCCTATTTCCCCCCCTCTTT
TTTTTCGCCCTTCCCCCTTTTCTCTTCCTTCTCTCTTTTTCCCCCTTTTG
TTTAGGTTATTCTCTCTCCTCCCTTATTTTTTCCCTCTCTTCCTATTACC
CATATTTTTGCTATTACCTTTTTCTCCACTTCACCCTCTTTTTCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_e12.g1 MSMg01no356_e12.g1 CHROMAT_FILE:
MSMg01no356_e12.g1 PHD_FILE: MSMg01no356_e12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:58 2005
         (349 letters)



>mm_chr6_112359357_112360105
          Length = 749

 Score =  652 bits (337), Expect = 0.0
 Identities = 346/349 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatgttcttttcagccagaatattgacttagtctgtttgctgctgctatgactgctgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatgttcttttcagccagaatattgacttagtctgtttgctgctgctatgactgctgtc 260

                                                                       
Query: 61  cgagactgcataatttatgaggaaagaagtttaaatgattacacatggttacacattatc 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 cgagactgcataatttatgaggaaagaagtttaaatgattacacgtggttacacattatc 320

                                                                       
Query: 121 gggcagctgcatctggcaaggcactagtacctgttttcataacaggaagcaggaaggaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggcagctgcatctggcaaggcactagtacctgttttcataacaggaagcaggaaggaaa 380

                                                                       
Query: 181 gagaaagcattcctatagggagaaatgaacctttgccaggtctaatctttaggactcagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagaaagcattcctatagggagaaatgaacctttgccaggtctaatctttaggactcagc 440

                                                                       
Query: 241 ctccatgatcttctcctccacacccctgccctcagtctctcactaggctcccaccactcc 300
           |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 ctccatgagcttctcctccacacccctgcccccagtctctcactaggctcccaccactcc 500

                                                            
Query: 301 tccatggaggactcacaattccatcttatgaactcttgatagcagcttc 349
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tccatggaggactcacaattccatcttatgaactcttgatagcagcttc 549


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 749
Length adjustment: 9
Effective length of query: 340
Effective length of database: 740
Effective search space:   251600
Effective search space used:   251600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)