BAC Information

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BAC

Clone NameMSMg01-356I08
Chromosome6 (Build37)
Map Location 59,438,492 - 59,438,828
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666954, Abcg2, Herc3, Nap1l5, D430015B01Rik, Tigd2, Gprin3
Downstream geneEG634166, EG627108, EG434019, LOC671300, EG627178, LOC100041706, LOC100041717, A530053G22Rik, LOC667066
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356I08.T7 (MSMg01no356_i08.b1)MSMg01-356I08.TJ (MSMg01no356_i08.g1)
ACCAG466643AG466644
length790772
length of high quality
(start - end)		416 (41 - 456)336 (68 - 403)
definitionCHROMAT_FILE: MSMg01no356_i08.b1 PHD_FILE: MSMg01no356_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:16 2005CHROMAT_FILE: MSMg01no356_i08.g1 PHD_FILE: MSMg01no356_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTTGTTCATCTCTGAGACCTATCTTTTAATGGGGTTATTTGATTTTCTGG
ATTCCATCTTCTTGTGTTCTTTAAATATATTGGATATTAGTCCCCTATCT
GATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCGTTTTTGT
CTTATTGACAGTGTCTTTTGCCTTGCAGAAGCTTTGCAGTTTCATGAGAT
CCCATTTTTAAGTTCTCGATCTTACAGCACAAGCTATTGCTGTTCTATAC
AGGAATTTTTTCCCCTGTGCCCATCTCTTTGAGGCTTTTCCCCACTTTCA
CCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGATCCAC
TTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCAATTCACATTCT
TCTACATGATAACAACCAGTTGTGCCAGCTCCATTGTTGAAAATGCTTTC
TTTCTTCCACTGGATGGTTTTAGCTCCCGTGTCATATATCTACCGACCCT
AGGCTGTGTGGTTTCATTTTTGTGTTCTTCCCCTCTATCTCTCTTGGCTT
TTCTTTTTTGTTCATTTAGTCCGCAACCCGTCTTTTTTTCACATCACTCT
CTTTGCTATTTAACTTTTCTCCTATTCTATGATCTTTTCCTTCCCTCAGC
TTCTTTCCCTCTTTCCTTTCACTTTTCTTCCCCTCTTTCCTCTCTTTTTT
TCCCCCACTTTTTCCAGCTTTTCTTCTTTTTTCCCTCTTC

ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXATCTTGGTCTGGTCTGGCCTTTGTTCACTCTCA
TCTGCTTTTTTCTTTCTCCTTGATTCAGCCACAGCAAGCACTGCCTGCCC
CCCCCCTTCTATCTCTGTGCTGGTTCTTCACTCCTTGCTGCTCTGTCTTT
CTAGGGCATTGTTGTTTCTCCCCACTAAGCTCCCAGGACACAGTCTCAGG
GTAAATTTCTTAACCTTGTTGATATAGTTTTATGAACAAGTCCTCCATAT
GTTTTGTTTGTATAATGTGTATAACTGAAATTTTCCTGTGTTCATCTGTC
TTCTCACAAAGATATAATTCCTGTGGTCATATGGATGCAGAGGGTTGATG
TGCTTTTTTTATCATTACTTTTACACACTGCTATCTTTAACGAATTGAAC
TTTACCCTGCATTTGAATGGCTTAACACCAAATGTTTAACATCATCTTCC
CACTTTGCACAATTGTTTTTATGCTACATTAATAATTTTATTTTTTATTC
GACATGTTTTTTTTTCTCTATCCCTTTCTTTCTATTACTATTACATCCAC
TCTATTTCTTTTCTTATACATCCCTCTTTTTACTCCTAATCTTTTTCCCT
TTATTACTTTTATCCTCTCTCTTTTTTTATTCATTATCCTAAAACTCCGA
TCCTAACCTTTTTTTTCCCCCATTCTATTTCCTATTTTTCAAATACCCTA
TCAATCCCATCCTCTATTCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_i08.g1 MSMg01no356_i08.g1 CHROMAT_FILE:
MSMg01no356_i08.g1 PHD_FILE: MSMg01no356_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:16 2005
         (336 letters)



>mm_chr6_59438292_59439029
          Length = 738

 Score =  590 bits (305), Expect = e-173
 Identities = 329/337 (97%), Gaps = 2/337 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcttggtctggtctggcctttgttcactctcatctgcttttttctttctccttgattca 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 atcttggtctggtctggcctttgttcactctcatctgctttttcctttctccttgattca 260

                                                                       
Query: 61  gccacagcaagcactgcctgcccc-ccccc-ttctatctctgtgctggttcttcactcct 118
           |||||||||||||||||||||||| ||||| ||||||||||||||||| |||||| ||||
Sbjct: 261 gccacagcaagcactgcctgcccctccccctttctatctctgtgctggctcttcattcct 320

                                                                       
Query: 119 tgctgctctgtctttctagggcattgttgtttctccccactaagctcccaggacacagtc 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgctgctctgtctttctagggcattgttgtttctccccactaagctcccaggacacagtc 380

                                                                       
Query: 179 tcagggtaaatttcttaaccttgttgatatagttttatgaacaagtcctccatatgtttt 238
           |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 381 tcagggtaaatttcttaaccttgttgatatagatttatgaacaagtcctccgtatgtttt 440

                                                                       
Query: 239 gtttgtataatgtgtataactgaaattttcctgtgttcatctgtcttctcacaaagatat 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtttgtataatgtgtataactgaaattttcctgtgttcatctgtcttctcacaaagatat 500

                                                
Query: 299 aattcctgtggtcatatggatgcagagggttgatgtg 335
           |||||||||||||||||||||||||||| ||||||||
Sbjct: 501 aattcctgtggtcatatggatgcagaggattgatgtg 537


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 738
Length adjustment: 9
Effective length of query: 327
Effective length of database: 729
Effective search space:   238383
Effective search space used:   238383
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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