Query= MSMg01no356_k11.b1 MSMg01no356_k11.b1 CHROMAT_FILE:
MSMg01no356_k11.b1 PHD_FILE: MSMg01no356_k11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:26 2005
(428 letters)
>mm_chr6_121510867_121511694
Length = 828
Score = 358 bits (185), Expect = e-103
Identities = 191/193 (98%)
Strand = Plus / Minus
Query: 7 ggcagcttaattcctgttcccatttcctgatgctgctaagaacacagcactgttaggcca 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 399 ggcagcttaattcctgttcccatttcctgatgctgctaagaacacagcactgttaagcca 340
Query: 67 cagacgttcagctcctagattttacacaacctcatctgtgaatatgtggttgatgaagta 126
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 339 cagacgttcagctcctagattttacacaaactcatctgtgaatatgtggttgatgaagta 280
Query: 127 gagctcatgtgtagaattgtgcagcagcgccaccaacaggttgtaaaatgttcctgtctc 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 gagctcatgtgtagaattgtgcagcagcgccaccaacaggttgtaaaatgttcctgtctc 220
Query: 187 tcagtgaaattct 199
|||||||||||||
Sbjct: 219 tcagtgaaattct 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space: 343161
Effective search space used: 343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no356_k11.g1 MSMg01no356_k11.g1 CHROMAT_FILE:
MSMg01no356_k11.g1 PHD_FILE: MSMg01no356_k11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:27 2005
(477 letters)
>mm_chr6_121330122_121330997
Length = 876
Score = 915 bits (473), Expect = 0.0
Identities = 476/477 (99%), Gaps = 1/477 (0%)
Strand = Plus / Plus
Query: 1 tttctgacatttgtactggagagtcactttctcttagtcgaatccttgccagtacgattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttctgacatttgtactggagagtcactttctcttagtcgaatccttgccagtacgattt 260
Query: 61 gtaggcaccatataaatctgtgtcctttctctcataggtcccttgaaggaggggctgtca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaggcaccatataaatctgtgtcctttctctcataggtcccttgaaggaggggctgtca 320
Query: 121 tttgctgtggtaattgtgacttagtaacactgtggagttttgaggatctaaaggcccacg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgctgtggtaattgtgacttagtaacactgtggagttttgaggatctaaaggcccacg 380
Query: 181 gaacatccacaccatgttgcttgccctccacagattggccgatggcctgtaattaggtct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaacatccacaccatgttgcttgccctccacagattggccgatggcctgtaattaggtct 440
Query: 241 acattttctctgccaccaaatgtgcatcagggaccctgtggacccccgggaacgacttga 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acattttctc-gccaccaaatgtgcatcagggaccctgtggacccccgggaacgacttga 499
Query: 301 tgacttgtcctgcctatggtcttccgaacctgagctccttctgtttctcgcttcccatcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgacttgtcctgcctatggtcttccgaacctgagctccttctgtttctcgcttcccatcc 559
Query: 361 tcaggatggtggttttcagccctctgcttcttgaagtgcaaaggaaactgcacagttaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tcaggatggtggttttcagccctctgcttcttgaagtgcaaaggaaactgcacagttaag 619
Query: 421 gacaccatgaggcaagtccttggggaaacacatccagatctgacaggggtttgcggc 477
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gacaccatgaggcaagtccttggggaaacacatccagatctgacaggggtttgcggc 676
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 876
Length adjustment: 10
Effective length of query: 467
Effective length of database: 866
Effective search space: 404422
Effective search space used: 404422
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
