BAC Information

Click to search

BAC

Clone NameMSMg01-357A01
Chromosome6 (Build37)
Map Location 18,511,246 - 18,511,640
singlet/doubletsinglet
Overlap genenone
Upstream geneMet, Capza2, St7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2
Downstream geneEG545829, Lsm8, Ankrd7, LOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357A01.T7 (MSMg01no357_a01.b1)MSMg01-357A01.TJ (MSMg01no357_a01.g1)
ACCAG467009AG467010
length724732
length of high quality
(start - end)
394 (331 - 724)497 (79 - 575)
definitionCHROMAT_FILE: MSMg01no357_a01.b1 PHD_FILE: MSMg01no357_a01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:53 2005CHROMAT_FILE: MSMg01no357_a01.g1 PHD_FILE: MSMg01no357_a01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGAGGCCGCG
GAATTCNTTGCGCTACCACAAAAAGCAAAAGAATTGCTAACGTTCATAAG
GCCAAACATAAAAAGAAAGAAATTCGTTCCTTCAGGAATCAGGACAGAAT
ATCAGAAATACTGTAAAGGCAATAATTAATCATAGGCTGTGTTTCTTAAA
ATAGCTAAGACATTTTAAAATAAAAAAACTCATTATCTAGAGCATCATCA
TTATATGTACATGTAATGTGTGATACAATTCTACCTTACTGTAGTGCAAT
ATATACATGATGGTAAAGCTTTNGATCNNTACTAAAATGGCAACATATTG
ACTCTTTGTAAAGAAAGGAAAACTGTATATTAAAAATTCTAGGGTACCTT
GGAATAAATGCAAAGAAAAGTAGTCACAAAACAATAGTTGCATTGTGCTG
GAATATTCAGAATAAGTGAATAAATAAAACAACATAGTTTACAGGAATGC
AGGATGTGGAAAGAGAAACAAAAAAACACAGTAAACAAAATTTACTTTTA
AGTTAATGGTTGATCTAAATTCATCTGTGATAATTATTACAGTAAATATA
AATAATATACACACACTGAATAAGAGGCAAAGACTTTTGTGTTGAGTAAA
AAGACTGTATATGCTATTTATGGAAATTGCCTTAAATATAATTATATGGG
TTGCTTAGTTTTATATATATATAT
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTCACTGTGGTTGCCAAGACC
TGCATAAGTGAACATTTCATCATCTAGGAGGGTCTTACAAGCACCCACCC
CTACGTGAGGAGCTTGTAGTTGATAGCTGCTTCAGGAGGGGAAGCCAGTT
GTCTTTAAGGATGGGGTTAGTCTCGAGTAGGACAAACATGGTCCAGTGAA
TGTCACATATCCTTACCTATATGGGTACCACAAATCAGGCCATGCAAGTT
AATAAAATGGGGCTGGGAGAGGGGCTAGTTGGGCAGGGAATAGATCTGGG
ATACATATCTAACACTGCTCTAGTGGTTCACACCTATTGTCTCAGTACTT
TGGAAACTGAGGCAGGAGGAGCATGCATTTGAAGGCAATCTGGAATACAA
GCTTCAGGTATGGGAATGTTACAAAGAGAGACTCTGTTTGGAAGGAAAAT
GGAAGAACAAAAAGAAGGAATGGAGGGAGGAAGTGAAGAATTGAGAAAGG
GAGGGAAGGGAGGAGAAAGGGGAAGCNCGATAAGGACGAGGNTTACGTTT
TNTTTTTTTTTTCCGCCTGTTCTTTGCCTTCGTCTTTCCCGTGTCTTCCT
CCCTTTCTTGTCTCCCGCCTTCTGGCTGTCCCCCTCGTCTCCCTTTATGC
CTTCTATTGTTTTCTTCTTTGTTTTCCTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_a01.b1 MSMg01no357_a01.b1 CHROMAT_FILE:
MSMg01no357_a01.b1 PHD_FILE: MSMg01no357_a01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:53 2005
         (394 letters)



>mm_chr6_18511046_18511840
          Length = 795

 Score =  723 bits (374), Expect = 0.0
 Identities = 390/396 (98%), Gaps = 3/396 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actaaaatggcaacatattgactctttgtaaagaaaggaaaactgtatattaaaaattct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 actaaaatggcaacatattgactctttgtaaagaaaggaaaactgtatattaaaaattct 536

                                                                       
Query: 61  agggtaccttggaataaatgcaaagaaaagtagtcacaaaacaatagttgcattgtgctg 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 535 agggtaccttggaataaatgcaaagaaaagtagtcacaaaacaatatttgcattgtgctg 476

                                                                       
Query: 121 gaatattcagaataagtgaataaataaaacaacatagtttacaggaatgcaggatgtgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gaatattcagaataagtgaataaataaaacaacatagtttacaggaatgcaggatgtgga 416

                                                                       
Query: 181 aagagaaacaaaaaaacacagtaaacaaaatttacttttaagttaatggttgatctaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 aagagaaacaaaaaaacacagtaaacaaaatttacttttaagttaatggttgatctaaat 356

                                                                       
Query: 241 tcatctgtgataattattacagtaaatataaataatatacacacactgaataagaggcaa 300
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 355 tcatctgtgataattattacagtaaatataaatgatatacacacactgaataagaggcaa 296

                                                                       
Query: 301 agacttttgtgttgagtaaaaagact--gtatatgctatttatggaaattgccttaaata 358
           ||||||||||||||||||||||||||  |||| |||||||||||||| ||||||||||||
Sbjct: 295 agacttttgtgttgagtaaaaagactctgtatctgctatttatggaa-ttgccttaaata 237

                                               
Query: 359 taattatatgggttgcttagttttatatatatatat 394
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 taattatatgggttgcttagttttatatatatatat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 795
Length adjustment: 9
Effective length of query: 385
Effective length of database: 786
Effective search space:   302610
Effective search space used:   302610
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)