BAC Information

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BAC

Clone NameMSMg01-357G20
Chromosome6 (Build37)
Map Location 136,538,045 - 136,774,416
singlet/doubletdoublet
Overlap geneAtf7ip, 1100001H23Rik, LOC100043894, Gucy2c, Hist4h4, H2afj, Wbp11
Upstream geneGrin2b, EG668137, LOC545887, E330021D16Rik, EG627022, LOC100043893
Downstream geneBC049715, C030030A07Rik, Art4, Mgp, Erp27, Arhgdib, Pde6h, Rerg, Ptpro, Eps8, Strap, Dera
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357G20.T7 (MSMg01no357_g20.b1)MSMg01-357G20.TJ (MSMg01no357_g20.g1)
ACCAG467331AG467332
length791779
length of high quality
(start - end)		487 (41 - 527)360 (71 - 430)
definitionCHROMAT_FILE: MSMg01no357_g20.b1 PHD_FILE: MSMg01no357_g20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:25 2005CHROMAT_FILE: MSMg01no357_g20.g1 PHD_FILE: MSMg01no357_g20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,538,045 - 136,538,527)(136,774,057 - 136,774,416)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTCACATAATCATTGATTAATATAGCATTCTCTTTTTGAGATAATATATC
CTTAAAATGTTTCTATTTTAGAGTATTTATTTGGTATATTTATATATAAC
TATATATAAACTATTGAAGTTACCTTCATATGGAATTGCATTTGATTTGT
GATGAAAAACTAATTTCTAGCTATTAGTAATAAATGTGAGTGGTGCATAC
GGTGTTGGCACAGTACTCATTAGGAAGCACTTACGTGAAAACCACGGCCA
TGCCTAATTTCAGCGATGCCATAATGATAGCAAGAAGATCATTTATCCTT
TTAGACTACCTGGAATTTAAGTGGAATCAAATGGAAAAGCTTTGCAGAAT
ATAAAAATTGAAGCTAAATTACATATCCTTATCGTTATAAATAATTATAA
TCATATAGTCAAAACCTATCATGTCTTATATTCATATACACATAATTAGT
AAAAATATGTGCCATATAACTAGATTATATTTGTACCTATTTACAATAGG
TTTATTAAATTCTTACTGGATTTTAAAGAAATTAGCACTTGCTTATAATG
AAATAATAAACTCTTTATAGCTCCAATTGTATTTTTATTCTTTTCACAAA
TATTTGGGGTTTGGAAATTTTTCCATGTCTCCCCGGGGTCTATAAAAACC
TCAAAAAATCCCTCCTTTTTCTTACACCCTCACGAAATAAATATATGCCC
CTTCGGCCTTTTTCTAAACACCTTTATTATACTAATAAATG

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTAAAATGGACTCATGGTTAGAATGTTGAG
AGTGTAAGCTGCTTAACACATTTCTCCTCATACTTGACTGGCTAGCAGGA
GAAAATTAAGTCTTTTTTATGTTAGAATTTTTAACAAATGAGTTTTTAAG
TGTGTGATTTGAGAATCCCTTTTCTTCCTTGTGGTTCAGTTATTTTTCTG
TAAAGAACACATCTTGGCATTTTGGGTTGAGAGGGTTGGAAGCACTAAGT
TCCCTAGTGGGTCAAAGCCATGTTTGTTCCATTCACCGACACTGTTAACA
GTTGTAGTAGCTCATAGTAATGTTGGTGATGGAAGTGTGAGTTATGGCCT
CTCTTCCTCTCTCCTTAGGAAAGGAAGCCCGAAAAAGAGAACTGTAAAAG
GCACGAATTTACAAACATTCTGGGAATTGCTCTAACCTTTGTGGAAATTT
CAATTATTTTGCCCGGAAAAAACCCTTAAGCTTTACTGCTGTTCGATATC
TAATTATGTTTGGTCATATACTGACTTTACCCCTAAGATTTTTATCTGGG
TGTCTAGTCCAAATCGGCCTTTCTATTTTCTTTCTTACTCAGACTTTGTC
CTGGTTGCTCGCTTTTTTTCTCTCCGCCTTCCCCTCTTCTTTTACTCCTC
CCAACCCATATCCATTGGTTTTCTCTTTTTTACTTGACCCTACCTGCTCC
ACGTTTCCCCTTTTTGTCCCTTCTCTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_g20.b1 MSMg01no357_g20.b1 CHROMAT_FILE:
MSMg01no357_g20.b1 PHD_FILE: MSMg01no357_g20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:25 2005
         (487 letters)



>mm_chr6_136537841_136538727
          Length = 887

 Score =  934 bits (483), Expect = 0.0
 Identities = 483/483 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctcacataatcattgattaatatagcattctctttttgagataatatatcctta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctcacataatcattgattaatatagcattctctttttgagataatatatcctta 264

                                                                       
Query: 65  aaatgtttctattttagagtatttatttggtatatttatatataactatatataaactat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaatgtttctattttagagtatttatttggtatatttatatataactatatataaactat 324

                                                                       
Query: 125 tgaagttaccttcatatggaattgcatttgatttgtgatgaaaaactaatttctagctat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgaagttaccttcatatggaattgcatttgatttgtgatgaaaaactaatttctagctat 384

                                                                       
Query: 185 tagtaataaatgtgagtggtgcatacggtgttggcacagtactcattaggaagcacttac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tagtaataaatgtgagtggtgcatacggtgttggcacagtactcattaggaagcacttac 444

                                                                       
Query: 245 gtgaaaaccacggccatgcctaatttcagcgatgccataatgatagcaagaagatcattt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtgaaaaccacggccatgcctaatttcagcgatgccataatgatagcaagaagatcattt 504

                                                                       
Query: 305 atccttttagactacctggaatttaagtggaatcaaatggaaaagctttgcagaatataa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atccttttagactacctggaatttaagtggaatcaaatggaaaagctttgcagaatataa 564

                                                                       
Query: 365 aaattgaagctaaattacatatccttatcgttataaataattataatcatatagtcaaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaattgaagctaaattacatatccttatcgttataaataattataatcatatagtcaaaa 624

                                                                       
Query: 425 cctatcatgtcttatattcatatacacataattagtaaaaatatgtgccatataactaga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cctatcatgtcttatattcatatacacataattagtaaaaatatgtgccatataactaga 684

              
Query: 485 tta 487
           |||
Sbjct: 685 tta 687


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space:   418329
Effective search space used:   418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no357_g20.g1 MSMg01no357_g20.g1 CHROMAT_FILE:
MSMg01no357_g20.g1 PHD_FILE: MSMg01no357_g20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:25 2005
         (360 letters)



>mm_chr6_136773857_136774616
          Length = 760

 Score =  696 bits (360), Expect = 0.0
 Identities = 360/360 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaaaatggactcatggttagaatgttgagagtgtaagctgcttaacacatttctcctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ttaaaatggactcatggttagaatgttgagagtgtaagctgcttaacacatttctcctca 501

                                                                       
Query: 61  tacttgactggctagcaggagaaaattaagtcttttttatgttagaatttttaacaaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tacttgactggctagcaggagaaaattaagtcttttttatgttagaatttttaacaaatg 441

                                                                       
Query: 121 agtttttaagtgtgtgatttgagaatcccttttcttccttgtggttcagttatttttctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 agtttttaagtgtgtgatttgagaatcccttttcttccttgtggttcagttatttttctg 381

                                                                       
Query: 181 taaagaacacatcttggcattttgggttgagagggttggaagcactaagttccctagtgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 taaagaacacatcttggcattttgggttgagagggttggaagcactaagttccctagtgg 321

                                                                       
Query: 241 gtcaaagccatgtttgttccattcaccgacactgttaacagttgtagtagctcatagtaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gtcaaagccatgtttgttccattcaccgacactgttaacagttgtagtagctcatagtaa 261

                                                                       
Query: 301 tgttggtgatggaagtgtgagttatggcctctcttcctctctccttaggaaaggaagccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tgttggtgatggaagtgtgagttatggcctctcttcctctctccttaggaaaggaagccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 760
Length adjustment: 9
Effective length of query: 351
Effective length of database: 751
Effective search space:   263601
Effective search space used:   263601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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