Query= MSMg01no357_k02.b1 MSMg01no357_k02.b1 CHROMAT_FILE:
MSMg01no357_k02.b1 PHD_FILE: MSMg01no357_k02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:40 2005
(476 letters)
>mm_chr6_34104603_34105478
Length = 876
Score = 737 bits (381), Expect = 0.0
Identities = 457/505 (90%), Gaps = 36/505 (7%)
Strand = Plus / Plus
Query: 8 ttcctcctaattctatctgccgctagccaaagagaagatctgggtctcagatctttaaca 67
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 172 ttcctcctaattctatctgccgctagccaaagagaagatctgggtgtcagatctttaaca 231
Query: 68 cgtgctttttcctccaagtacgctatctgctcagatactgactccattccccttccctga 127
| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 232 cacgctttttcctctaagtacgctatctgctcagatactgactccattccccttccccga 291
Query: 128 ctttaggctaaaaagagcccaactagaagggacatgtagcagtggttctctgctcctggg 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 ctttaggctaaaaagagcccaactagaagggacatgtagcagtggttctctgctcctggg 351
Query: 188 ctgagctggacaagaatatgcagtcggttcagataaagcttccatgcaagctctctgccg 247
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ctgagctggacaagaatacgcagtcggttcagataaagcttccatgcaagctctctgccg 411
Query: 248 agtgcttcccatacactgcactcttac-------------agaaacactagacaaggcat 294
||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 412 agtgcttcccatacactgcactcttactagcgatgcttacagaaacactagacaaggcat 471
Query: 295 tctagatggatataaataccctaggaaactgctg-----------------------ctc 331
|||||||||||||||||||||||| ||||| ||| |||
Sbjct: 472 tctagatggatataaataccctagaaaactcctgaaaattaccacaagccccagggactc 531
Query: 332 aactgcccaaggggatgcaggtgcagtcaggaacccaggggtcaggaagagcaaaggcac 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 aactgcccaaggggatgcaggtgcagtcaggaacccaggggtcaggaagagcaaaggcac 591
Query: 392 aaaacccaaaagcggaccccagcatggaggaaagcgggcatggtaaatgactgcaggctg 451
|||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 592 aaaatccaaaagcggaccccagcatggaggaaagcgggcccgggaaatgactgcaggctg 651
Query: 452 agacccctcagaactaccatgtgtt 476
|||||||||||||||||||||||||
Sbjct: 652 agacccctcagaactaccatgtgtt 676
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space: 403556
Effective search space used: 403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no357_k02.g1 MSMg01no357_k02.g1 CHROMAT_FILE:
MSMg01no357_k02.g1 PHD_FILE: MSMg01no357_k02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:41 2005
(409 letters)
>mm_chr6_34245367_34246175
Length = 809
Score = 752 bits (389), Expect = 0.0
Identities = 405/411 (98%), Gaps = 2/411 (0%)
Strand = Plus / Minus
Query: 1 tatgttcacatccatagctcatttttaatcacaaaaattagcggtctctacatctcgttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 tatgttcacatccatagctcatttttaatcacaaaaattagcggtctctacatctcgttt 710
Query: 61 gtccttacatcagtctagttgggtttatgtatcgggagtctcactttacagattagctga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 709 gtccttacatcagtctagttgggtttatgtatcgggagtctcactttacagattaactga 650
Query: 121 aatcagggaaatcttagtaagatgtcgaagatctcacagcttgtcagcaatgccaccttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 aatcagggaaatcttagtaagatgtcgaagatctcacagcttgtcagcaatgccaccttc 590
Query: 181 taattctgtggcctttccgctgactttcttactctgttcctgctttcttaactcacgaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 taattctgtggcctttccgctgactttcttactctgttcctgctttcttaactcacgaca 530
Query: 241 tagaaacatttaagtggctgcctatgattaagctaaaggaagaaagcaattatcttctta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 tagaaacatttaagtggctgcctatgattaagctaaaggaagaaagcaattatcttctta 470
Query: 301 aactgattttctctccggttcttcttggcttgctgactcatgagtgagaagcaaaatttt 360
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 aacggattttctctccggttcttcttggcttgctgactcatgagtgagaagcaaaatttc 410
Query: 361 ccatcaggtagaagtcatctcagtggtatgaggatgt--gagaggtggtca 409
||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 409 ccatcaggtagaaatcatctcagtggtatgaggatgtgagagaggtggtca 359
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space: 320000
Effective search space used: 320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
