BAC Information

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BAC

Clone NameMSMg01-357O22
Chromosome6 (Build37)
Map Location 90,708,203 - 90,876,523
singlet/doubletdoublet
Overlap geneLOC100043646, EG665685
Upstream geneV1r-ps2, V1r-ps3, V1ra6, V1ra5, V1rb4, V1r-ps4, V1ra2, V1rb8, V1ra4, V1ra3, V1rb2, V1rb1, V1ra1, LOC625050, V1ra7, V1ra8, V1rb3, LOC100043191, V1r-ps5, V1ra9, BC048671, Chst13, Uroc1, Zxdc, Ccdc37, Klf15, Aldh1l1, Slc41a3, Iqsec1
Downstream geneNup210, Hdac11, Fbln2, LOC665716, Wnt7a, LOC100043659, LOC625420, Chchd4, Tmem43, Xpc, Lsm3, Slc6a6, Grip2, C130022K22Rik, 4930590J08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357O22.T7 (MSMg01no357_o22.b1)MSMg01-357O22.TJ (MSMg01no357_o22.g1)
ACCAG467711AG467712
length750775
length of high quality
(start - end)		489 (46 - 534)406 (84 - 489)
definitionCHROMAT_FILE: MSMg01no357_o22.b1 PHD_FILE: MSMg01no357_o22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:04 2005CHROMAT_FILE: MSMg01no357_o22.g1 PHD_FILE: MSMg01no357_o22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,708,203 - 90,708,687)(90,876,118 - 90,876,523)
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCGTTGCTATCGGTAGCCTGCACTGTCTCCCTTGAGGACAGT
GTCTCCTATCTAGACAATGGTCATCATTATTACCATGTCTCTCCAGCCCT
ACAGTGGTCTCACTTCTTCATGAAAGTGGTGTGACTGTCTAGAAACCTCA
TGTATAGTCTCTCTACCTCAAAACTATGCATGTCCTCCTCAGGGGCTGGC
CCCACTCACTTCCTTCCTCACTCCTGCTTGACTGCCTAGCTTCCAAGTAC
ATCTGTAAACAAACAGGTGGTTTCTGCCTCCAGGTCATTGTACTCGGTGT
GCCCTCTGCCCAGAGGGTCTTCTCCAGCTCACTTTCTTGGTCAACCTCCA
TTCAAGGCTACCTTCTCAGGCCACTTTCTCTTTTCTCCCCTTTATGTTGT
AGAAGCCATTTCATTCAGGGGTACCTCATGCACTTCACTCAGTTAAAGTG
AGTCCATAGATGCAGTATCTCCATGCCTGTCACCACATCCTAGTTCAGAT
GACCTGCCTTCCAAACAAGCCTGTACCTGTTTCTCCGTGCATCTCCATGG
CTAGGGCAGCCCCCACTCTGCTTTTTGTCTCTGTTAAAATGTCTTTTTTT
TTAAACTTTTTATTAAAGGAGCCTCCTCCTTAATTTTCTTGAATGGTTTT
CTTTTTCCTTTACAAATTTTTTCTAGCGCCACTCTCACCTTTATCACAGG


CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCACAGATTGCTAAT
TGCATGGAGATTCTTGGGTCTCTAGCAGATGCTGGCACTGGCACCTCTGT
AAGGAGGTCTAGTCCCTCTGATGCATGAAGTCACCAAGCCATATGCTACC
ACACTGGAGCTGCTGGAGGACCCAGAGCCAGTACACACTCCAGGAATGTA
TTTTAGGGGTGCGGTATTTGGGTGGTCTTTATTGGCAAAGTAGGCTAGAA
GACAGTTGGGTGGAGATTCATGAAGATGGGCTTCCTAGGTGGCCTCATCT
ATCAGCTTCTTCACAAGGCCTCCTGAGAGATACTGGCAGCATAGAGGTAG
CATCTGTGTAACAGCGACAGAGCAGTCCTGAGACCTGGTTCTAACTTTAA
CTTCTTCTAGCTCTGGNCCTTTCCAAAGGATTCTTGGGTCTGCTGGAGAA
ACTGTGTCTTCCTTTGGTGGATTATGAGGGCCACTGCCCCACAAAGGTAC
TCGGTTCGCAGGTGAAGCACAAGGGCCTATTTTTCCCCTTTAACAAAAAA
ACCCCAAATGATTTTCCCCTGTACCAAAGATATGTCCGCATTACTTCTTA
ATGTAAAAAAACATTGGTCGTCTCTTTTAATCTGTTTCTCTTCCCGCGCT
TTGTTTTATGATTTTCCCTTGTGTCGCTTGTTCCTTCCCGCCCTTCTATT
CCTTCGATTTTGTCAGTACTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_o22.b1 MSMg01no357_o22.b1 CHROMAT_FILE:
MSMg01no357_o22.b1 PHD_FILE: MSMg01no357_o22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:04 2005
         (489 letters)



>mm_chr6_90707999_90708887
          Length = 889

 Score =  915 bits (473), Expect = 0.0
 Identities = 482/485 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcaccgttgctatcggtagcctgcactgtctcccttgaggacagtgtctcctat 64
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcactgttgctatcggtagcctgcactgtctcccttgaggacagtgtctcctat 264

                                                                       
Query: 65  ctagacaatggtcatcattattaccatgtctctccagccctacagtggtctcacttcttc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctagacaatggtcatcattattaccatgtctctccagccctacagtggtctcacttcttc 324

                                                                       
Query: 125 atgaaagtggtgtgactgtctagaaacctcatgtatagtctctctacctcaaaactatgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgaaagtggtgtgactgtctagaaacctcatgtatagtctctctacctcaaaactatgc 384

                                                                       
Query: 185 atgtcctcctcaggggctggccccactcacttccttcctcactcctgcttgactgcctag 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 385 atgtcctcctcaggggctggccccactcacttccttcctcactcctgcttgactgcctgg 444

                                                                       
Query: 245 cttccaagtacatctgtaaacaaacaggtggtttctgcctccaggtcattgtactcggtg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cttccaagtacatctgtaaacaaacaggtggtttctgcctccaggtcattgtactcggtg 504

                                                                       
Query: 305 tgccctctgcccagagggtcttctccagctcactttcttggtcaacctccattcaaggct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgccctctgcccagagggtcttctccagctcactttcttggtcaacctccattcaaggct 564

                                                                       
Query: 365 accttctcaggccactttctcttttctcccctttatgttgtagaagccatttcattcagg 424
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 565 accttctcaggccactttctcttttctccccttcatgttgtagaagccatttcattcagg 624

                                                                       
Query: 425 ggtacctcatgcacttcactcagttaaagtgagtccatagatgcagtatctccatgcctg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggtacctcatgcacttcactcagttaaagtgagtccatagatgcagtatctccatgcctg 684

                
Query: 485 tcacc 489
           |||||
Sbjct: 685 tcacc 689


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space:   421041
Effective search space used:   421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no357_o22.g1 MSMg01no357_o22.g1 CHROMAT_FILE:
MSMg01no357_o22.g1 PHD_FILE: MSMg01no357_o22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:04 2005
         (406 letters)



>mm_chr6_90875918_90876723
          Length = 806

 Score =  772 bits (399), Expect = 0.0
 Identities = 404/406 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttccacagattgctaattgcatggagattcttgggtctctagcagatgctggcactggca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttccacagattgctaattgcatggagattcttgggtctctagcagatgctggcactggca 547

                                                                       
Query: 61  cctctgtaaggaggtctagtccctctgatgcatgaagtcaccaagccatatgctaccaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 546 cctctgtaaggaggtctagtccctctgatgcatgaagtcaccaagccatatgccaccaca 487

                                                                       
Query: 121 ctggagctgctggaggacccagagccagtacacactccaggaatgtattttaggggtgcg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ctggagctgctggaggacccagagccagtacacactccaggaatgtattttaggggtgcg 427

                                                                       
Query: 181 gtatttgggtggtctttattggcaaagtaggctagaagacagttgggtggagattcatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gtatttgggtggtctttattggcaaagtaggctagaagacagttgggtggagattcatga 367

                                                                       
Query: 241 agatgggcttcctaggtggcctcatctatcagcttcttcacaaggcctcctgagagatac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 agatgggcttcctaggtggcctcatctatcagcttcttcacaaggcctcctgagagatac 307

                                                                       
Query: 301 tggcagcatagaggtagcatctgtgtaacagcgacagagcagtcctgagacctggttcta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tggcagcatagaggtagcatctgtgtaacagcgacagagcagtcctgagacctggttcta 247

                                                         
Query: 361 actttaacttcttctagctctggncctttccaaaggattcttgggt 406
           ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 246 actttaacttcttctagctctggccctttccaaaggattcttgggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space:   316409
Effective search space used:   316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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