BAC Information

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BAC

Clone NameMSMg01-358E06
Chromosome6 (Build37)
Map Location 53,926,609 - 53,927,139
singlet/doubletsinglet
Overlap geneCpvl
Upstream geneJazf1, LOC666259, LOC666516, D430007I03, Creb5, LOC384386, 1200009O22Rik
Downstream geneLOC666305, Chn2, LOC100042056, Prr15, EG640926, Wipf3, Scrn1, Fkbp14, Plekha8, LOC100041292, 2410066E13Rik, Znrf2, Nod1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358E06.T7 (MSMg01no358_e06.b1)MSMg01-358E06.TJ (MSMg01no358_e06.g1)
ACCAG467963AG467964
length737752
length of high quality
(start - end)		537 (32 - 568)114 (64 - 177)
definitionCHROMAT_FILE: MSMg01no358_e06.b1 PHD_FILE: MSMg01no358_e06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:29 2005CHROMAT_FILE: MSMg01no358_e06.g1 PHD_FILE: MSMg01no358_e06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGCGCTATACGACTCACTATATTCCGAGGATCCGCGGAATTCTATTAAG
TTAATCCTGAGAGATATGACAAGGGTCATATATTCAATCAAATTATGATT
ATAAACCCTTACCTCAATGGGAAAATGTTGCTGAGAACCCTTTTAAATTT
TCCACAACCAGTATTTTGTATTATGCTAAGTTGGATTGTGTTAAACATGT
GGTAAATAGATTTGTACACATTTTGCATTTTTAAAATGTTCTTGTGGTTT
GACATTTTGAAGCACAGAAAATCAAAAGCAGGCATTGTGTTTGCATAATT
GTATATTTCCCTTTATAATCAGAAACGTGAGTGAATGGGGTATTTATTCA
CTGAACAATATTTTGTTTAACATTTAGCTGCCAGGGTTGTAATTCACTGT
CAGCGTACTTGCATTGCTTGTGCAAGGGCTCTGGGTTCCATTCCCAGCTC
TAAAATAAAGCCACTCCAACCAGAAGTAAAAACTAAGGCTAGCCATCATG
CTTAGGTAGCAATGGTGTGGAGCCAGGGACTGGCAGGCGCAGCTGCTGTA
ATACCCTAGGCAAGGCTGGGATTAAGGTGGAAAGGCATCTATCTGCCTCC
GGTGGAAGATCTAAGATGGTGGGTCGCAAAAGCTCAGTAACCAAGAGGAC
CAGTGGTTTAATGCAGTATGTGAAAACTCCTTGTAATGAGAAAAAAGCCT
ATGATTTGAAGAAATTCCAGAATTTTATTGGAAAACG

GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTGGATGTTCTGTCATGAGACAGCCATTGTTAAACTA
GCTGGACCATGGCCTGTAAGAATCTAATTAAATTATATATATATGTGTGT
GTGTGTGTGTGTGTGAATATGAATGGCTAAGCAGATATTCATTCTGCCTA
GTTCTCTCCCTAGAGAACCCTGACTACTACCGAAAACAATACCATGATCC
CTGTCACAAATTGCAGCGCGATACCGACCGCCCAACCCTTATGTGCCCCA
TATTATAATCTTAACTTCACAAAATAACTACTTATATAATTACCTGACCC
TCCCCTACTCCCCCTGCCCTTCCCCCTCCCCCACTTTCTGTCTCCTACCC
TATTTTCTCCCCCCCCCTCTACGTGTTCTGCTACCCCCCTTTTCCTTCTT
CCCCTCCCCCCCTTCCCCCTTTTTTTCCCTCTTTTCTCCCCCGCCTTCTT
TCCTCTCCCCTTCCTTTTCCCTTTCTCCCCCCCCTCTCCTTTTTCTTCCC
CTCCTTCCCCTTTCTCCCTCCTCCCCTTCCCCTCTTTCCCCTCCCCCTCT
CCCCCCCCCCCTTTTCCCCCTTTTTTTCTCCCCTCCACCCTTTCTTTCCC
TTCCTCCCTTTCTCCCCTCACCACCCCCCTTCCCCCCCCTCCCCCCTTTT
TCCCTTCTTCTTCCCCCCCCCCCCTTTTCCCCCTCTCCCCCTTTCCTCTT
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_e06.b1 MSMg01no358_e06.b1 CHROMAT_FILE:
MSMg01no358_e06.b1 PHD_FILE: MSMg01no358_e06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:29 2005
         (537 letters)



>mm_chr6_53926403_53927339
          Length = 937

 Score =  982 bits (508), Expect = 0.0
 Identities = 526/532 (98%), Gaps = 2/532 (0%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattctattaagttaatcctgagagatatgacaagggtcatatattcaatcaaattatg 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 gaattctattaagttaatcctgagagatatgacaagggtcatatattcaatcaaattatg 678

                                                                       
Query: 67  attataaacccttacctcaatgggaaaatgttgctgagaacccttttaaattttccacaa 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 attataaacccttacctcaatgggaaaatgttgctgagaacccttttaaattttccacaa 618

                                                                       
Query: 127 ccagtattttgtattatgctaagttggattgtgttaaacatgtggtaaatagatttgtac 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ccagtattttgtattatgctaagttggattgtgttaaacatgtggtaaatagatttgtac 558

                                                                       
Query: 187 acattttgcatttttaaaatgttcttgtggtttgacattttgaagcacagaaaatcaaaa 246
           |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 557 acattttgcatttttaaaatgttctaatggtttgacattttgaagcacagaaaatcaaaa 498

                                                                       
Query: 247 gcaggcattgtgtttgcataattgtatatttccctttataatcagaaacgtgagtgaatg 306
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 497 gcaggcattgtgtttgcataattgtatatttccctttataatcagaaacctgagtgaatg 438

                                                                       
Query: 307 gggtatttattcactgaacaatattttgtttaacatttagctgccagggttgtaattcac 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gggtatttattcactgaacaatattttgtttaacatttagctgccagggttgtaattcac 378

                                                                       
Query: 367 tgtcagcgtacttgcattgcttgtgcaagggctctgggttccattcccagctctaaaata 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tgtcagcgtacttgcattgcttgtgcaagggctctgggttccattcccagctctaaaata 318

                                                                       
Query: 427 aagccactccaaccagaagtaaaaactaaggc-tagccatcatgcttaggtagcaatggt 485
           |||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||
Sbjct: 317 aagccactccaaccagaagttaaaactaa-gcgtagccatcatgcttaggtagcaatggt 259

                                                               
Query: 486 gtggagccagggactggcaggcgcagctgctgtaataccctaggcaaggctg 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gtggagccagggactggcaggcgcagctgctgtaataccctaggcaaggctg 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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