BAC Information

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BAC

Clone NameMSMg01-358E11
Chromosome6 (Build37)
Map Location 32,051,119 - 32,051,445
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100038973, AB041803, Mkln1, Podxl, EG619959, LOC620104, 1700012A03Rik
Downstream genePlxna4, Chchd3, LOC100039118
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358E11.T7 (MSMg01no358_e11.b1)MSMg01-358E11.TJ (MSMg01no358_e11.g1)
ACCAG467973AG467974
length766731
length of high quality
(start - end)		330 (36 - 365)509 (65 - 573)
definitionCHROMAT_FILE: MSMg01no358_e11.b1 PHD_FILE: MSMg01no358_e11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:30 2005CHROMAT_FILE: MSMg01no358_e11.g1 PHD_FILE: MSMg01no358_e11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCCAA
CATGACATACAACAAACTGGGGCACAGGCAAAATTGGAGAACGGAGGCAG
ATGACCCTGAGGGCACCTGAGAAATGTGAGGACACCAACCTAGGAAGATT
AGGATTTGACACAGCTCCTGGAGTCCATAGGAGCACAGGTAGGGTTGGCC
TTGGCCTCTGAGTTCCACCAGTGCTCCTTCTACCACATGCTGAGATGCCA
CTATGACTTGGTCTAGCCCCAATAAAATGACAACTGGAGTTGAATCTCCA
GATCTCCCAGTGGAAGGAGAAACCCACCCTTTGAAGGCTGTCCTCTCTGA
CCTTCACATGTGTGTNGTGCCTCCTCTCCCCCCATACACACACACACACA
CACACACACACACACACACACACNCACACACACACACCCACACACACNCC
CCGAAATGGAAATACCTTTTTTTTTGAAAAGGGAAAAACTGGTTTTAAAT
AGCAAAAAAGCCGCCCGGGGTTTTTAAAAAAAGGTAAGGGAGGTTCGGAG
GGACCCCAAACCCCCTTTTCCCCCAGGAATGGGGGAGAATCCCTTTTATT
TGGTTCCGGGGCCCCCCCCCCCGTTTTTTTTTTTGAAAAAAACCCCAAAG
AAAATTTGGGGCCTCTATCGGGCTCGTGTGGGGAAAAAAAACTGGGTGTC
CCTGGGGGTGTTGTCTCCCCCCCCGGGGGGGTGGGAGGGGCCCCCCACCC
TTTTTTTTTTCCCCCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCAGGAAAGTAAGTTTCTATAAATCATGTGATCTATG
GTGGTTTGGCAGGACACCACTCAAATCCCTGTGAAGAGAACCATGTGAAC
ACACTCCAACTTGCCTTTGGTTATGTGTGTGAATGAACCACTTTGAGAGC
CAGGTCCTCAAATCCCAGGCAAGCTTCAGATGAGCCAGTCTGCCACCACC
ATCAAGTCTTCCAGCCAAGGTCCCGGGCACAACGGCACAGGGAAGAGATG
TCCTTCAGAATCCTGGCTCACCAAACCCTTGAGAGGACATGATGGTTGCC
ATCATGTGTAGTGATTCATCTCGGGGTGGTTTGTTATACAGGTGATAAGG
CTGAAGCACCAAATCTGTGGCGACGAAAAATGGTGCTCTCCTCGGGGTGA
GAGAAAGGTCCTTTGGTACTATGAGTTTGTCATCACTCTTGCCTTTCTTT
TGAAGTGCTGGAGTTTTGAGCCCAGGGCTTCATGCATGCTTGGCAAGTGC
TTTACTACTGAGCTACCTCCCTGTCCTAGAACTCCATTTGATGAAGCTCA
TTTGGCCATGGGTATAAAAACAAACAGTGTGTTTCTGCTCCTGCAGCCAA
ACCCTCCTTGGGGGAAGGATCAACCCCTGCCCCTGTTCAAAAATTTCCTC
CAAACCCCCCCAAAGGGGCCGCTTATTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_e11.b1 MSMg01no358_e11.b1 CHROMAT_FILE:
MSMg01no358_e11.b1 PHD_FILE: MSMg01no358_e11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:30 2005
         (330 letters)



>mm_chr6_32051004_32051733
          Length = 730

 Score =  625 bits (323), Expect = 0.0
 Identities = 326/327 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccccaacatgacatacaacaaactggggcacaggcaaaattggagaacggaggc 63
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ggaattccccaacatgagatacaacaaactggggcacaggcaaaattggagaacggaggc 383

                                                                       
Query: 64  agatgaccctgagggcacctgagaaatgtgaggacaccaacctaggaagattaggatttg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 agatgaccctgagggcacctgagaaatgtgaggacaccaacctaggaagattaggatttg 323

                                                                       
Query: 124 acacagctcctggagtccataggagcacaggtagggttggccttggcctctgagttccac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 acacagctcctggagtccataggagcacaggtagggttggccttggcctctgagttccac 263

                                                                       
Query: 184 cagtgctccttctaccacatgctgagatgccactatgacttggtctagccccaataaaat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 cagtgctccttctaccacatgctgagatgccactatgacttggtctagccccaataaaat 203

                                                                       
Query: 244 gacaactggagttgaatctccagatctcccagtggaaggagaaacccaccctttgaaggc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gacaactggagttgaatctccagatctcccagtggaaggagaaacccaccctttgaaggc 143

                                      
Query: 304 tgtcctctctgaccttcacatgtgtgt 330
           |||||||||||||||||||||||||||
Sbjct: 142 tgtcctctctgaccttcacatgtgtgt 116


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space:   231441
Effective search space used:   231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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