Query= MSMg01no358_f16.b1 MSMg01no358_f16.b1 CHROMAT_FILE:
MSMg01no358_f16.b1 PHD_FILE: MSMg01no358_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:36 2005
(560 letters)
>mm_chr6_51091015_51091973
Length = 959
Score = 944 bits (488), Expect = 0.0
Identities = 502/510 (98%), Gaps = 7/510 (1%)
Strand = Plus / Minus
Query: 4 ggaattctgctgttctatcaaggtggtgtagactcttagaatggcaggattggtcattga 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 ggaattctgctgttctatcaaggtggtgtagactcttagaatggcaggattggtcattga 536
Query: 64 gatagacacatcagggattgagaacgaggaataacgatgggattggtatagagaaaacaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 gatagacacatcagggattgagaacgaggaataacgatgggattggtatagagaaaacaa 476
Query: 124 taaactaaacccaaataaataactaaataaaaaaacccccaaccaaccaaacaaaagtca 183
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 475 taaactaaacccaaataaataactaaat-aaaaaacccccaaccaaccaaacaaaagtca 417
Query: 184 gagccagtgcagcatccctgaaggaatccgggcaagcctggggtgacctttaagcttcct 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 gagccagtgcagcatccctgaaggaatccgggcaagcctggggtgacctttaagcttcct 357
Query: 244 tccaacaaacatcacagtgctttgtcatgtggcaggtggagccccttccattcctaagga 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 tccaacaaacatcacagtgctttgtcatgtggcaggtggagccccttccattcctaagga 297
Query: 304 tgtcagatgcattctgggaaaccctccacatggatacgtttggaaatattgctagttctt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 tgtcagatgcattctgggaaaccctccacatggatacgtttggaaatattgctagttctt 237
Query: 364 cgtggagattgtgtccaagtaaggaat------gctaaattatctgcattggccgccttc 417
||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 236 cgtggagattgtgtccaagtaaggaatgctaaagctaaattatcttcattggccgccttc 177
Query: 418 ttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttc 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 ttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttc 117
Query: 478 ttcttcttcttcttcttcttcttcttcttc 507
||||||||||||||||||||||||||||||
Sbjct: 116 ttcttcttcttcttcttcttcttcttcttc 87
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 188
Number of extensions: 58
Number of successful extensions: 58
Number of sequences better than 10.0: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 959
Length adjustment: 10
Effective length of query: 550
Effective length of database: 949
Effective search space: 521950
Effective search space used: 521950
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no358_f16.g1 MSMg01no358_f16.g1 CHROMAT_FILE:
MSMg01no358_f16.g1 PHD_FILE: MSMg01no358_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:36 2005
(472 letters)
>mm_chr6_50911483_50912354
Length = 872
Score = 882 bits (456), Expect = 0.0
Identities = 468/472 (99%)
Strand = Plus / Plus
Query: 1 ttgccaaagcaccttaagtgggtatgggataaagtgaggctagcggcacctcttggggcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgccaaagcaccttaagtgggtatgggataaagtgaggctagcggcacctcttggggcc 260
Query: 61 cgtgtgggttggtactgatcccaggcacagtgtgcacgatgctgatccctcctcccacta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgtgtgggttggtactgatcccaggcacagtgtgcacgatgctgatccctcctcccacta 320
Query: 121 gcccagctttcagcagtgtatggagcaatcaagatgcttctgctagctccggctccttgc 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcccagctttcatcagtgtatggagcaatcaagatgcttctgctagctccggctccttgc 380
Query: 181 ccactgctattagcttattccacggcaaagaattatatttcctctttccctgaatatttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccactgctattagcttattccacggcaaagaattatatttcctctttccctgaatatttc 440
Query: 241 aaaacagtacaaataatgtataagtccataaacataggagtgctttggattcttcgtagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaacagtacaaataatgtataagtccataaacataggagtgctttggattcttcgtagg 500
Query: 301 ttaattttgagaaaagaaaaagagcatgttacatctctctagcctcctgttcagaaaggc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaattttgagaaaagaaaaagagcatgttacatctctctagcctcctgttcagaaaggc 560
Query: 361 agacacagtgggctaacgcatgtgtctcttattctaaatccctgtcatccaaatgcagaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agacacagtgggctaacgcatgtgtctcttattctaaatccctgtcatccaaatgcagaa 620
Query: 421 aagcaaaaggcttggaggtggtggtttgtgtttttatattcctgctctgcag 472
||||||| || ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 621 aagcaaagggtttggaggtggtggtttgtgtttttaaattcctgctctgcag 672
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space: 398244
Effective search space used: 398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
