BAC Information

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BAC

Clone NameMSMg01-358K19
Chromosome6 (Build37)
Map Location 79,305,843 - 79,306,203
singlet/doubletsinglet
Overlap genenone
Upstream genePap, Reg3d, Reg3a, Reg2, Reg1, Reg3g, LOC621716, Ppia-ps6_789.1, LOC384440
Downstream geneLOC621815, LOC100043392, Lrrtm4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358K19.T7 (MSMg01no358_k19.b1)MSMg01-358K19.TJ (MSMg01no358_k19.g1)
ACCAG468274AG468275
length769744
length of high quality
(start - end)		401 (38 - 438)361 (66 - 426)
definitionCHROMAT_FILE: MSMg01no358_k19.b1 PHD_FILE: MSMg01no358_k19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:00 2005CHROMAT_FILE: MSMg01no358_k19.g1 PHD_FILE: MSMg01no358_k19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGA
GTTCTGACCTGACACCTTGGCTGAGGTTGGTCCCATGTAGGCTGAGAAAT
CAGGTTGCATTCCATTTGAGTTTCATGTTCAAATATTATTTTCTTTTCTT
ATTTACTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTAT
TTATTTATTTATTTATTTATTTATTTTTAACATATTTTTCTCAATTACAT
TTCCAATGCTATCCCAAAAGTCCCCCATACCCTCCGCCCCACTTCCCTAC
CCACTCATTCCCATTTTTTTTTTTTTTTTTTTTGGCCCTGGCATTCCCCT
GTACTGGAGCATATACAGTTTGCGTGTCCAATGGGCCTCTCTTTCCAGTG
ATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGAT
CCGGGGTACTGGTTAGTTCATAATGGTGTTCCACCTATAGGGGTGCAGAT
CCCTTTAGCTCCTTGGGGACTTTCTCTAGCTCCTCCCTTGGGGGGCCCTG
GGATCCCTCCCTTAACTGACTGTGGAGCTCCCCCTTCTGGGGTTGCTAAG
GCCCCGGGATGTCTCCACAAAAAAAACTTCCTATTGGGTCCCTTTTCTTT
AAAAACTTGGTTATGGTATGTAAGGGGGTCTCCGGTTTTGAAACTTTATT
AATGAGATGGCTGTCCCCCGCTTAAGCCAACTTCCACTGGCGCTTATCCT
TTCTCTTTCTCTTTCAATN

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAAATAGTTAAATATTTCCAATAAATCACTAAGATG
GAGATATTTATAGAGGAATTCTGAGCTAGAAGTCTGTAGAAAAAGAAGCA
AATGTGAATGAGTGATTTAATGCTCTTCCTAGAGCATATGTCTTCATTAC
TATCCAAATACTATGTTCTGTTGATGAGATGTTCAGAATACTGGATAATA
TGAAATAATAGACAAACCTTCTAGTTATAGTTTTCCATTAAACATTTCTT
TGTCTGGGGTAACACACAGTACAGCTTACACCTTTTTAACATATAACTAA
ACTATTTTGTGTCAATAATACTACAAAGCTCACCATAATAAGAATGTACA
TTCAACACAGGTGAAAATTATAACCAACTCAAGAATAAGTTGCATATATT
ATAATCCTAAATGGTTCACAAGGCTGGTAATGTCACTTGCATGATTAATT
ATATACTTAATTTTACCATGAGAACTATTCATTTTACACCTACTCTAGAT
ATGGGCAGAAAAGTGATAAAAATAAGTTTAGGCTTAAACTTCTAAATAAC
TAGTAGTTGAAAAACTTTTTAACAGACATAACATTCTCTCCAAAAAAAAA
GGGGAAAATTACAATTGTGTTTTTGGGGGGGAAAAAAAAATTTTGAAAAA
ATTATTTTTTGTGGGGTTCAAAAAAAGGTTTTTAAAAAAGGCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_k19.g1 MSMg01no358_k19.g1 CHROMAT_FILE:
MSMg01no358_k19.g1 PHD_FILE: MSMg01no358_k19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:00 2005
         (361 letters)



>mm_chr6_79305643_79306403
          Length = 761

 Score =  683 bits (353), Expect = 0.0
 Identities = 359/361 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatagttaaatatttccaataaatcactaagatggagatatttatagaggaattctgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatagttaaatatttccaataaatcactaagatggagatatttatagaggaattctgag 260

                                                                       
Query: 61  ctagaagtctgtagaaaaagaagcaaatgtgaatgagtgatttaatgctcttcctagagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 ctagaagtctgtagaaaaagaagcaaatgtgaatgagtgatttaatgctcttcttagagc 320

                                                                       
Query: 121 atatgtcttcattactatccaaatactatgttctgttgatgagatgttcagaatactgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atatgtcttcattactatccaaatactatgttctgttgatgagatgttcagaatactgga 380

                                                                       
Query: 181 taatatgaaataatagacaaaccttctagttatagttttccattaaacatttctttgtct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taatatgaaataatagacaaaccttctagttatagttttccattaaacatttctttgtct 440

                                                                       
Query: 241 ggggtaacacacagtacagcttacacctttttaacatataactaaactattttgtgtcaa 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggggtaatacacagtacagcttacacctttttaacatataactaaactattttgtgtcaa 500

                                                                       
Query: 301 taatactacaaagctcaccataataagaatgtacattcaacacaggtgaaaattataacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taatactacaaagctcaccataataagaatgtacattcaacacaggtgaaaattataacc 560

            
Query: 361 a 361
           |
Sbjct: 561 a 561


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 761
Length adjustment: 9
Effective length of query: 352
Effective length of database: 752
Effective search space:   264704
Effective search space used:   264704
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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