BAC Information

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BAC

Clone NameMSMg01-358O03
Chromosome6 (Build37)
Map Location 89,205,053 - 89,205,224
singlet/doubletsinglet
Overlap genenone
Upstream geneEefsec, Ruvbl1, Sec61a1, 4933428M03Rik, Mgll, Abtb1, Podxl2, LOC100043146, Mcm2, Gpr175, 4933427D06Rik, Gm1965, LOC100043153, LOC100043159, EG624483, EG624491, LOC665547, EG624537, Gm839
Downstream gene4930512J16Rik, Plxna1, Chchd6, Txnrd3, V1r-ps1, V1rb7, V1rb9, V1r-ps2, V1r-ps3, V1ra6, V1ra5, V1rb4, V1r-ps4, V1ra2, V1rb8, V1ra4, V1ra3, V1rb2, V1rb1, V1ra1, LOC625050, V1ra7, V1ra8, V1rb3, LOC100043191, V1r-ps5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358O03.T7 (MSMg01no358_o03.b1)MSMg01-358O03.TJ (MSMg01no358_o03.g1)
ACCAG468432AG468433
length673778
length of high quality
(start - end)
174 (83 - 256)239 (61 - 299)
definitionCHROMAT_FILE: MSMg01no358_o03.b1 PHD_FILE: MSMg01no358_o03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:15 2005CHROMAT_FILE: MSMg01no358_o03.g1 PHD_FILE: MSMg01no358_o03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTTTTATTTCTATAAXXXXXXXXXXXXXXXXXXGTCCTATTTCCACAGA
TGCGCGGAATTCTACAGGTTTTCACACCAAGGAGGGGGGTCCACTGTGAC
TTCAGTCTCCTTGTCTCCTACGATACCCACCTACCTGCTGCTCCTGCTTC
TGACCTCCACACCCCATTGTGCCTCAAGTATCTCTATCTCCAGAACATAC
TCTCCACCTGTAATGGCCGCTCCTACAGCACCTCCCGTGAGGCATTCTAG
TCCTTATATACTGATGTAGACAGAGTCTTCAGTAGTGACACATCCCAGCC
CAATAAGGACACTCCTGAAGAGGTATGTTTTTTTGTTTTTCCCTTCCCCA
AGGAAACCTCTCCCCCAAAATTGGAGCTTCCCGCCCCCCTAACATGATCC
TTAACGGGGGGTTTTTGGAAACTCCAGGAAATTCCCTCCTCACACCCCCG
GATATTTCCAGTTGATCCCCTTTCCCTTTTTTTTATTCCACAAAAAATTT
TTTTTTAAAGATCCCTTCCCCCTTCAAAAAAACTCTTTGTTACCCCCATG
CGTATTGGTATCTTTTCCCCTCCTCTATACCTTTTAAAAAACAATTTTTC
CCAAAAAAAACTATTACACCCGGGGTTTCCCAAGTGGGGGTGGTATCATA
TGCTTATCTTGTACATAAAAAAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTGATTCCAGAACAGGAGTGTTTCTGCCAGAAGGTGCAGT
CATCCCTTTGAAGTAGAAGCCGAGATTTCCCTGGCCACTTGGGCTCCTGG
TGTCCTTCGCACCTGTGATCCAGCCCACTAAAAGAGAAATCCAACTGTTT
CTCCTCGATGGAGGTAAGGAGAATGTGTCCTGGAGAGCAGGAGATCCTTT
AGGCTACCTCTTGACGTTCCCATCGCCATATGATTAAAGTCAGCAGGAAA
CCACAACAAGTTAATCCAGGAAGGACGACAAATGGTCCACACCCTTCAAG
ATTGAGATGTGAGCCACCCTTCTTATGTAAAGAACCTCGACCTGATTTGT
TGATGGTGCCCATCAATGTGGATTGTTTACGTTTGTTTACGTCCCTTTCT
GTTTGACTTTTTTTTTTCCTCATTCTTCAAACATCCCTATTTTATTTGTC
GCCATTTTAATATTTTTATTTTTTTAATAATAGCGCCATACCTCCCCTAT
CTCCATTCTTTTCCTATTTATCTTTCTACTTTCACCTTCATCTTCATTTT
ACTACATTCCTTGCATTTTCCATCCTTTTTTACCTCCTATATCTTTCTCC
CTTCGACGCTATTTTCTATTCGCGCTTATTCCGATTTCCCCTTCATTTAC
GGATATTTCTCTCCCCCCCGTTACAATTTATTGTTTTTATATATTTGTTA
TTTAACCCTCTCTCTCTCTCACCCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_o03.b1 MSMg01no358_o03.b1 CHROMAT_FILE:
MSMg01no358_o03.b1 PHD_FILE: MSMg01no358_o03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:15 2005
         (174 letters)



>mm_chr6_89204851_89205424
          Length = 574

 Score =  317 bits (164), Expect = 2e-91
 Identities = 170/172 (98%)
 Strand = Plus / Plus

                                                                       
Query: 3   gggggtccactgtgacttcagtctccttgtctcctacgatacccacctacctgctgctcc 62
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 203 gggggtccactgtgacttcagtctccttgtctcctacgatgcccacctacctgctgctcc 262

                                                                       
Query: 63  tgcttctgacctccacaccccattgtgcctcaagtatctctatctccagaacatactctc 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tgcttctgacctccacaccccattgtgcctcaagtatctctatctccagaacatactctc 322

                                                               
Query: 123 cacctgtaatggccgctcctacagcacctcccgtgaggcattctagtcctta 174
           |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 323 cacctgtaatggccgctcctacagcacctcccatgaggcattctagtcctta 374


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 174
Length of database: 574
Length adjustment: 8
Effective length of query: 166
Effective length of database: 566
Effective search space:    93956
Effective search space used:    93956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)