BAC Information

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BAC

Clone NameMSMg01-358O06
Chromosome6 (Build37)
Map Location 23,413,622 - 23,598,166
singlet/doubletdoublet
Overlap geneCadps2
Upstream geneLOC100040959, LOC668018, LOC668022, Ptprz1, Aass, EG668044, EG546894, EG668053, EG384356, Fezf1
Downstream geneRnf133, Rnf148, Tas2r118, LOC100041082, Slc13a1, LOC100041094, Iqub, Ndufa5, Asb15, EG626715, Lmod2, Wasl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358O06.T7 (MSMg01no358_o06.b1)MSMg01-358O06.TJ (MSMg01no358_o06.g1)
ACCAG468438AG468439
length759754
length of high quality
(start - end)
347 (57 - 403)345 (60 - 404)
definitionCHROMAT_FILE: MSMg01no358_o06.b1 PHD_FILE: MSMg01no358_o06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:16 2005CHROMAT_FILE: MSMg01no358_o06.g1 PHD_FILE: MSMg01no358_o06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,597,823 - 23,598,166)(23,413,622 - 23,413,966)
sequence
CGCTATACGACTCCTATGTGCAGAGATCCGCGGAATTCTGTGAATTTTTC
CATGCAGAATGGCAGTACTTGGATGCAAAAGTAACCCGAAAGAGACTATT
AGAGGAAGAAAAATGTTTGTGCAGGAACATCAGAGCCAAGATACAGCAAA
ACTTGGGCAAATGCCAGGGTGAGGCCACGTCTTCCTGTTATTTACAGTCC
TTTGTGTTCCTGACTCTGGGAAAGTTTAACTGTTAATCACGCATACCACC
ACTGAATTTTCAATGTTTTAAAGTCTTTCTTGGGACAGTGAAGCTATTCC
ATATATTACCAAGTGTCATACTAAAGAGAAAAGGACCCAGAGACTCAATA
GAAGCTCTTTTTGGGTGATTGAATCCTGAATAGATGAGCTGGTGTCTGTA
CACCCACCGCTGGCTAGGAGGAGCTGGGGCTCTCGTGTGCTAATGCGGCT
AATGGCTTCCGCGATTTTCTCTCCACAGTTGTGGAGACGATTGTGTGTGG
TTGCTGGTCACTTTTCATCCTCTTTAACTCTCCTCTCTTTTTAATTCATT
ATTTACACATCCTCCATTTTTTTTCCTACTAACTTTTTTTAAACTTTTTT
CCTTTCAATTGTCTCCACTTTTTTTTTCTTTTTTTCTATCCCCATCCCTT
CTTTTTTTTTTATAATACACTTACCTTTTTCCCCTTTTTTTTTCTTCTTT
TTTATTTCCACCGTTAATTATTTCCTTTATTTTTTCCCCTACCACTACCT
CTCTTTTAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTGAAAGAAAACACAAAACAATTCCTGGGTATAACCAATA
TCTTTATTGATATGTAAAAATAATTTTTACACAAAACATTGATAAAGAGG
GTTTTTCTCCTGGTAGGTGGTGGCGCATAATCACAACTTTTAGAAGATGG
GGGAAGGGAGGATAATGAGGTAGCGGGCAACCTGAGCCACACAGTGAGTC
TGCGACCAGCCTGGGCTACAAACCAAGATCCAGTCTCAACAACAAACAAA
CAAGCAAACTAACAGCACTTCAAACAGTTCGAACTGCGTCAGCAGTGTAG
ACCAGGAAGAGACACTTGGCACTTAAAGGTTTAATATTGACTAGACCCTT
TAAAACCAACCGCTTAGCTAAATATCTATGATCTTGTGTCTACCTGCCTT
CAGCTAGCATTGATTTATCTGTCTGTTTGCTTTTCTCCATTCTCCACTGT
GTAAACAAGTTTCTGTATTTTAAGTGTATAACCACGTTCTAAAAATTGCT
TCAGCTTTCTTATCCTAACTCTCTCTTTCCTGAATTAAACCACCGTTGTT
TTACTCTATTAGTACTCATAGCATGTGTGACTAGTGGTAATTGGGTAAAT
AGGTGTGTTTTATTGGACAACACTCTTCTCCTCTCCCCATGTTCTTTTCT
TGTATTCGGGGTCATCACAGTGTTTATTGTACCCCGTGCGCATTGTGCTT
TATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_o06.b1 MSMg01no358_o06.b1 CHROMAT_FILE:
MSMg01no358_o06.b1 PHD_FILE: MSMg01no358_o06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:16 2005
         (347 letters)



>mm_chr6_23597623_23598369
          Length = 747

 Score =  642 bits (332), Expect = 0.0
 Identities = 341/344 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaatggcagtacttggatgcaaaagtaacccgaaagagactattagaggaagaaaaatgt 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 544 gaatggcagtacttggatgcaaaagtaacccgaaagacactattagaggaagaaaaatgt 485

                                                                       
Query: 61  ttgtgcaggaacatcagagccaagatacagcaaaacttgggcaaatgccagggtgaggcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ttgtgcaggaacatcagagccaagatacagcaaaacttgggcaaatgccagggtgaggcc 425

                                                                       
Query: 121 acgtcttcctgttatttacagtcctttgtgttcctgactctgggaaagtttaactgttaa 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 acgtcctcctgttatttacagtcctttgtgttcctgactctgggaaagtttaactgttaa 365

                                                                       
Query: 181 tcacgcataccaccactgaattttcaatgttttaaagtctttcttgggacagtgaagcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tcacgcataccaccactgaattttcaatgttttaaagtctttcttgggacagtgaagcta 305

                                                                       
Query: 241 ttccatatattaccaagtgtcatactaaagagaaaaggacccagagactcaatagaagct 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ttccatatagtaccaagtgtcatactaaagagaaaaggacccagagactcaatagaagct 245

                                                       
Query: 301 ctttttgggtgattgaatcctgaatagatgagctggtgtctgta 344
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ctttttgggtgattgaatcctgaatagatgagctggtgtctgta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space:   249444
Effective search space used:   249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no358_o06.g1 MSMg01no358_o06.g1 CHROMAT_FILE:
MSMg01no358_o06.g1 PHD_FILE: MSMg01no358_o06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:16 2005
         (345 letters)



>mm_chr6_23413422_23414166
          Length = 745

 Score =  644 bits (333), Expect = 0.0
 Identities = 342/345 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgaaagaaaacacaaaacaattcctgggtataaccaatatctttattgatatgtaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgaaagaaaacacaaaacaattcctgggtataaccaatatctttattgatatgtaaaa 260

                                                                       
Query: 61  ataatttttacacaaaacattgataaagagggtttttctcctggtaggtggtggcgcata 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 ataatttttacacaaaacattgataaagagggtttttctcctggtaggtggtggcgtata 320

                                                                       
Query: 121 atcacaacttttagaagatgggggaagggaggataatgaggtagcgggcaacctgagcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcacaacttttagaagatgggggaagggaggataatgaggtagcgggcaacctgagcca 380

                                                                       
Query: 181 cacagtgagtctgcgaccagcctgggctacaaaccaagatccagtctcaacaacaaacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacagtgagtctgcgaccagcctgggctacaaaccaagatccagtctcaacaacaaacaa 440

                                                                       
Query: 241 acaagcaaactaacagcacttcaaacagttcgaactgcgtcagcagtgtagaccaggaag 300
           |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 acaagcaaacaaacagcacttcaaacagtccgaactgcgtcagcagtgtagaccaggaag 500

                                                        
Query: 301 agacacttggcacttaaaggtttaatattgactagaccctttaaa 345
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agacacttggcacttaaaggtttaatattgactagaccctttaaa 545


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)