BAC Information

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BAC

Clone NameMSMg01-358P08
Chromosome6 (Build37)
Map Location 131,350,012 - 131,350,429
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC625436, EG625473, LOC640779, LOC667793, EG667798, EG625558, LOC625566, EG636947, LOC625628, EG625648, LOC667830, EG434094, Klra2, LOC434095, 2010012C16Rik, Styk1, Csda
Downstream geneLOC625758, 5430401F13Rik, LOC625781, Tas2r130, Tas2r107, Tas2r106, Tas2r104, Tas2r105, Tas2r114, LOC639802, EG114600, Prb1, LOC631126, LOC100043878, Prpmp5, EG667929
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358P08.T7 (MSMg01no358_p08.b1)MSMg01-358P08.TJ (MSMg01no358_p08.g1)
ACCAG468489AG468490
length753732
length of high quality
(start - end)
389 (33 - 421)422 (62 - 483)
definitionCHROMAT_FILE: MSMg01no358_p08.b1 PHD_FILE: MSMg01no358_p08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:21 2005CHROMAT_FILE: MSMg01no358_p08.g1 PHD_FILE: MSMg01no358_p08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTCTTTT
TAATCGCTGAGTAGTACTCCATTGTGTAAATGTACCACATTTTTTGTATC
CATTCCTCTGTTGAGGGGCATCTGGGTTAAGAAGAGCTAATACCAATACT
CCTCAAATAAGTCCCCAATTTGGAAACAGAAGGAACATTGCCAAATTTCT
TTTTATGAGGCCACAGTCACCATTGTACTTAAACCACACAAACACTCAAG
AAAAAATAGAATTTCAGACCAATTTCCCTCATGAATATTGATGCAAAATT
ACTCAATAAAGTATTCACAAACTGAGGCCAAGAACACATTGAAGGCATCA
TGCACCATGGTCGAGTAGGCTTCATCCCATGGATGTAGGGGGTAGTTCAA
TACATGAATATCCACCAGTGAAATTCATACTAACTGCAAGGAAAAACTCA
TGTGATTATCTTCAGTAGATGCTGACAACGAGTTCTATAAAATCCAGCTT
CCCCTTCTTTTTAAAAGATTTGGAGAGAACATGGATATGTTGGTGCATAC
CTATACCCAATAAAGTCAATATGTTGCCAAACCAACAGACTAACATCCAA
ACTAATATGGATTAGTAGAACTTAACGAAATCTCCTGACTAAAAATCCAC
GGGCAAAATGTTAAGGGGATGGTCAAAATTCTTCTACACATATTCTTTTT
CCAAAATGGGGTAAACTTAAAGAGTGTTTTATACCAAGAAGTTATTACAA
TAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTGAGAGTGACTCAAGCTCATGACATCAAAACAGTTGAGA
ATGGGAGTCAGAACCTGATATATAACCATGGCTAAACTACTGCCCCCCTT
CTGATTTACAGGTATTTGGGGTTTCTTGTTTTCTAGAATGGCAAAAGATA
ATAGCAGTCACTCAAAACATCATCCCCCAAGGCAAAGTAATGTGGTGACT
TGATTCTTATGGTTTTGTTTTTACGAACTAATTTAATTGAACTGAAGTCT
CCATGGTTGATATTTCTAATTTCTGTTTTTAATTTGTCACTCTTGAAACA
AGCTTCAAATTAATTTTCTCGTTTTGTTTGCAGGTGTAGGTGTGAAATGC
ATATGGGCTCATGTGGAGGATGGAGGATAAAGGAGGACTCACAGGAGTTG
GTGCTTTCCTTCTACCACATGGCTCCTAGGGTTTGAACACAGACAACAGG
CTTGGTAGCAAGTTCTCTTATCAAATGAAACATCTTGCCAGATTCCCCCC
CCAATAAAAAAATCTCTGATTTCCATGATGAGTGCATGTATCTTTGCATA
TATGGTATACTTGCAGGCCATAAATTTGGTAATTGGGGGGCCCTATTATG
GCTTACTGTCTCTTTTTTTCCCAAATTACCACGGTTCCAGATCTTGCTCA
AGATCCTGTTTAGCTCTCTACTTGGCTTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_p08.g1 MSMg01no358_p08.g1 CHROMAT_FILE:
MSMg01no358_p08.g1 PHD_FILE: MSMg01no358_p08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:21 2005
         (422 letters)



>mm_chr6_131349808_131350629
          Length = 822

 Score =  770 bits (398), Expect = 0.0
 Identities = 413/418 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   agtgactcaagctcatgacatcaaaacagttgagaatgggagtcagaacctgatatataa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 agtgactcaagctcatgacatcaaaacagttgagaatgggagtcagaacctgatatataa 563

                                                                       
Query: 65  ccatggctaaactactgccccccttctgatttacaggtatttggggtttcttgttttcta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ccatggctaaactactgccccccttctgatttacaggtatttggggtttcttgttttcta 503

                                                                       
Query: 125 gaatggcaaaagataatagcagtcactcaaaacatcatcccccaaggcaaagtaatgtgg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gaatggcaaaagataatagcagtcactcaaaacatcatcccccaaggcaaagtaatgtgg 443

                                                                       
Query: 185 tgacttgattcttatggttttgtttttacgaactaatttaattgaactgaagtctccatg 244
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 442 tgacttgattcttatggttttgtttttatgaactaatttaattgaactgaagtctccatg 383

                                                                       
Query: 245 gttgatatttctaatttctgtttttaatttgtcactcttgaaacaagcttcaaattaatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gttgatatttctaatttctgtttttaatttgtcactcttgaaacaagcttcaaattaatt 323

                                                                       
Query: 305 ttctcgttttgtttgcaggtgtaggtgtgaaatgcatatgggctcatgtggaggatggag 364
           ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 322 ttctcgttttgtttgcaggtgtatgtgtgaaatgcacatgggctcatgtggaggatggag 263

                                                                     
Query: 365 gataaaggaggactcacaggagttggtgctttccttctaccacatggctcctagggtt 422
           ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 262 gataaaggaggactcacaggagttggtactttccttctaccacatggttcctagggtt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space:   335769
Effective search space used:   335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)