XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTCTCG
CACCTGCTTACTAGTTAGGCACAGCGGAGGCCCGCGCCATTTTATAATGG
CGATTGCTCGCTGCACACACGGCTCTCCTCAGAGATTACTGGCGGTACGC
ACGCGATTGCTCGCAGCACATACCGGCTCTCCACACAAAAGTAAGTAAAT
AAATAGTGCAAATAAAAACAAAGTGAAATAAACTAAGGGGTTATTTACAC
ATCGCACTTCATCCAGGATGCTTGCTTTTGTTTCCTTTGATTGCCTGAGC
CCATGCTCTACTTCTTATTCGCAGCCAGTTTTAAGATCTAATCTAAAATT
CCCAGTATGTTCTTTATATTTTGAGGTCTTCACCTGGAAATCCTCAAAAT
GTATCTGTATCTCTTATCTCTTTCTATTTTAGTCTTCATCCATAACTTTA
AAATTAGCTGATGACACATTCCAGTTAAGGAAATCAGTTCACAGATGTGT
CAATATAGGTCCAGATTCGACCTTTTCCTGACTTTCTTTCTTTTTGTCTC
ATATTAGGTCACAAAACTACCAGTGTGAAGCTCTGAATCTTGCATTCAGG
ATGATGAGAAAGGAAGTTTAAGGTCAAAGATGACATGNACTACAGAGAGA
AATCCAGGGACAAGGAAGGATGGGATTTTTCAGTAGTGGCTTCTGGGCAA
GAATACACGATTAAAGGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTATATTTAGATATTTTGAAATGGCATCTTCAAACACTTA
TTTTAGCTGCTTCCTGCATCTCACCGATTGACACCCATGAGCAACTTGGA
TTCTTCTTGGTCAATTTTTTAAAGTAATTAATTACAAGTAATACAATTTT
AGTGCCTTTTGACTTTATGGCTTATTTAATCTGCTCTTAAAGTTCATATA
TAAAATGTCTCATAAATTTAATGTTCAATATCATGGTATTTTACATTAAA
ACTACCTACAGTAATTGTAGTTACCCTATCAAATTTAGCAAAATGCTTGC
TATACAAGAATAAATTCAACTATTGTTGTGGAAACACCTGTGTATTTACT
TTGTGCTTTTTATTTTATACAAAATAAAAAATAGAAAATACACTTTGATT
TCAGTACATAACTTCATATTATTTAGAGAAAAATAAGCAACATATATGAT
TTTGTTTTTTAATCTTTTTATAATTTTATTGATTATTTCATTTATTGGGG
TCCCCATGATCTGTCTGATGGTGTGCATCTGCATCTGTATTGGTCAGACT
CTGGCAAAGCCTATCAGGGAACAGCTATACCAGGCTCCTATCAGCAAGTA
CTTCATTGCATCAGCAATAGTGTCTGGGTTTGGGGTGCGCACATGGGTTG
CATCCCTATGTATGGCAGTC

Query= MSMg01no359_a03.b1 MSMg01no359_a03.b1 CHROMAT_FILE:
MSMg01no359_a03.b1 PHD_FILE: MSMg01no359_a03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:25 2005
         (515 letters)



>mm_chr6_63139542_63140456
          Length = 915

 Score =  965 bits (499), Expect = 0.0
 Identities = 508/511 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactctcgcacctgcttactagttaggcacagcggaggcccgcgccattttataa 64
           |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 863 gaattcactctcgcacctgcttactacttaggcacagcggaggcccgcgccatcttataa 804

                                                                       
Query: 65  tggcgattgctcgctgcacacacggctctcctcagagattactggcggtacgcacgcgat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 tggcgattgctcgctgcacacacggctctcctcagagattactggcggtacgcacgcgat 744

                                                                       
Query: 125 tgctcgcagcacataccggctctccacacaaaagtaagtaaataaatagtgcaaataaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tgctcgcagcacataccggctctccacacaaaagtaagtaaataaatagtgcaaataaaa 684

                                                                       
Query: 185 acaaagtgaaataaactaaggggttatttacacatcgcacttcatccaggatgcttgctt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 acaaagtgaaataaactaaggggttatttacacatcgcacttcatccaggatgcttgctt 624

                                                                       
Query: 245 ttgtttcctttgattgcctgagcccatgctctacttcttattcgcagccagttttaagat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ttgtttcctttgattgcctgagcccatgctctacttcttattcgcagccagttttaagat 564

                                                                       
Query: 305 ctaatctaaaattcccagtatgttctttatattttgaggtcttcacctggaaatcctcaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ctaatctaaaattcccagtatgttctttatattttgaggtcttcacctggaaatcctcaa 504

                                                                       
Query: 365 aatgtatctgtatctcttatctctttctattttagtcttcatccataactttaaaattag 424
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 503 aatgtatctgtatctcttatctctttctattttagtcctcatccataactttaaaattag 444

                                                                       
Query: 425 ctgatgacacattccagttaaggaaatcagttcacagatgtgtcaatataggtccagatt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ctgatgacacattccagttaaggaaatcagttcacagatgtgtcaatataggtccagatt 384

                                          
Query: 485 cgaccttttcctgactttctttctttttgtc 515
           |||||||||||||||||||||||||||||||
Sbjct: 383 cgaccttttcctgactttctttctttttgtc 353


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space:   457025
Effective search space used:   457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no359_a03.g1 MSMg01no359_a03.g1 CHROMAT_FILE:
MSMg01no359_a03.g1 PHD_FILE: MSMg01no359_a03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:25 2005
         (537 letters)



>mm_chr6_63043548_63044484
          Length = 937

 Score = 1023 bits (529), Expect = 0.0
 Identities = 535/537 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatatttagatattttgaaatggcatcttcaaacacttattttagctgcttcctgcatct 60
           |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 201 tatatttagatattttgaaatggcatcttcaaactcttatttcagctgcttcctgcatct 260

                                                                       
Query: 61  caccgattgacacccatgagcaacttggattcttcttggtcaattttttaaagtaattaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caccgattgacacccatgagcaacttggattcttcttggtcaattttttaaagtaattaa 320

                                                                       
Query: 121 ttacaagtaatacaattttagtgccttttgactttatggcttatttaatctgctcttaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttacaagtaatacaattttagtgccttttgactttatggcttatttaatctgctcttaaa 380

                                                                       
Query: 181 gttcatatataaaatgtctcataaatttaatgttcaatatcatggtattttacattaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttcatatataaaatgtctcataaatttaatgttcaatatcatggtattttacattaaaa 440

                                                                       
Query: 241 ctacctacagtaattgtagttaccctatcaaatttagcaaaatgcttgctatacaagaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctacctacagtaattgtagttaccctatcaaatttagcaaaatgcttgctatacaagaat 500

                                                                       
Query: 301 aaattcaactattgttgtggaaacacctgtgtatttactttgtgctttttattttataca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaattcaactattgttgtggaaacacctgtgtatttactttgtgctttttattttataca 560

                                                                       
Query: 361 aaataaaaaatagaaaatacactttgatttcagtacataacttcatattatttagagaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaataaaaaatagaaaatacactttgatttcagtacataacttcatattatttagagaaa 620

                                                                       
Query: 421 aataagcaacatatatgattttgttttttaatctttttataattttattgattatttcat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aataagcaacatatatgattttgttttttaatctttttataattttattgattatttcat 680

                                                                    
Query: 481 ttattggggtccccatgatctgtctgatggtgtgcatctgcatctgtattggtcaga 537
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttattggggtccccatgatctgtctgatggtgtgcatctgcatctgtattggtcaga 737


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)