BAC Information

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BAC

Clone NameMSMg01-359A06
Chromosome6 (Build37)
Map Location 143,354,762 - 143,355,094
singlet/doubletsinglet
Overlap genenone
Upstream geneB230216G23Rik, Gys2, Ldhb, Kcnj8, Abcc9, 5330439B14Rik, Cmas, Gm766, EG665037, St8sia1, LOC665056, 5730419I09Rik, Etnk1, D6Ertd474e
Downstream geneSox5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359A06.T7 (MSMg01no359_a06.b1)MSMg01-359A06.TJ (MSMg01no359_a06.g1)
ACCAG468533AG468534
length741728
length of high quality
(start - end)
399 (28 - 426)334 (58 - 391)
definitionCHROMAT_FILE: MSMg01no359_a06.b1 PHD_FILE: MSMg01no359_a06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:25 2005CHROMAT_FILE: MSMg01no359_a06.g1 PHD_FILE: MSMg01no359_a06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGTGTGGGCCCTT
GCGGGTGTCAGGCGACTCCGCTGGCAAGGTAGCCCGGGGCTCGAGTGGAG
CGGAAGGGGTTTGTGCCCCAGATCAAGCCCAGGTAGCCTGCTTCCCTATG
TACAGCAGTCTCAGGTTCCGCGCGATTGGATTGGGGCAGGCGCTGTGTTC
CACTCACCAGAGGTCTTAGGATCCCGTGGGGAGTCCCGTGTGGGCCCTTG
CGGGTGTTGGGCAAGACTCTGCTGGCAAGGTAGCCGGGGGCTCGAGTCGA
GCGGAAGGGCGCTTTTAAAGTCTTTTAAGTTGCCAGTTCTGTTTGTTCTC
TAAAATAGATCAGCACATAAAATAGAGACAGATATCCATTTTTTAATATT
TACCCTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGACTCTGTCT
CTCTGTCTTTCTGTCTCTCTGCTTGTTAGACTCTCTGTTCCCCTTCAGTT
TCTCGCTGTTTCCCCCCTGACTCTTTACGCTTTATCACGGATTTTTTCTG
AAATTTGCTTGTTTCCCTGTCTTCTATTATTTCGCTCTTTTTGTCTTTTT
CTTCTTTCCTATATCTCCCATTATCGCCTTTTGCCTCCTTATTCTCCTAA
ACAATACCTGCTACATTTTTTTTTTCCCCCCACCTACTTTTCCATTTACT
TCTCTTTAAAACCCTTTTATTCTTCGCATCAATCACTAATT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXAGTTCCCAGAACCCACATCCAACGACTCCAACCACATGTAGCT
CCGGCCCCAGGGTATCTGACCCCTGCCTCTGACCTCAGACACCTACACAT
GTGCACATGCACATGAATATACATGCGTGTGTGCGCTCATACATATACAC
ACACATATATAATAAAAAGAAATTTTTAAAGGTATATATATGGGTGTTAG
ATGAAGAGACTCAGTACTCATGACAAGATGATTGTCCATGGGATCCCAGC
ACCTCTGCTCCCAGAAAACGTAAGTGATAACAAGTGTCATATACTGTGAC
CATGTCGCCCACTCAAGCCACAGTGGTCTGGGTTTTGTAGATGTGCTCGC
TTCCTTCCAAGGGGGTTTTCATCATGCAAATCGTCTTTCTCATGGGCCTG
CAAAAAATGAAAACAACGGCAACTCATGCTTGTTCCGTCCACTCTTAGGG
CTCCTCTTGTTTTCACTACGCCGCTCCTTTCAATCCGCAAAAAAATGGAT
TATTCCCTTACCCCTTTCCCCCCTCTTTTTCTACCCTTTACCTTACTCCA
TCGTCCATATTTCTAATATCACCTTACTTTTTTTTCCTCACCTCCCCTTT
TCACTATATATAAATCCTAATTTCACTGTGACTACCCATTTTTTATGATC
TTCCGCGTTTTCCTACTCCTCTATACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_a06.g1 MSMg01no359_a06.g1 CHROMAT_FILE:
MSMg01no359_a06.g1 PHD_FILE: MSMg01no359_a06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:26 2005
         (334 letters)



>mm_chr6_143354422_143355155
          Length = 734

 Score =  571 bits (295), Expect = e-167
 Identities = 324/339 (95%), Gaps = 11/339 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   agttcccagaacccacatccaacgactccaaccacatgtagctccggccccagggtatct 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 673 agttcccagaacccacatccaacaactccaaccacatgtagctccggccccagggtatct 614

                                                                       
Query: 61  gacccctgcctctga---cctcagacacctacacatgtgcacatgcacatgaatatacat 117
           |||||||||||||||   ||||||||||||||||||||||||||||      ||||||||
Sbjct: 613 gacccctgcctctgacctcctcagacacctacacatgtgcacatgc------atatacat 560

                                                                       
Query: 118 gcgtgtgtgcgctcatacatat--acacacacatatataataaaaagaaatttttaaagg 175
           || |||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||
Sbjct: 559 gcatgtgtgcgctcatacatatacacacacacatatataataaaaagaaatctttaaagg 500

                                                                       
Query: 176 tatatatatgggtgttagatgaagagactcagtactcatgacaagatgattgtccatggg 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 499 tatatatatgggtgttagatgaagagactcagtactcatgacaagatgattgtccattgg 440

                                                                       
Query: 236 atcccagcacctctgctcccagaaaacgtaagtgataacaagtgtcatatactgtgacca 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 atcccagcacctctgctcccagaaaacgtaagtgataacaagtgtcatatactgtgacca 380

                                                  
Query: 296 tgtcgcccactcaagccacagtggtctgggttttgtaga 334
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tgtcgcccactcaagccacagtggtctgggttttgtaga 341


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space:   235625
Effective search space used:   235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)