BAC Information

Click to search

BAC

Clone NameMSMg01-360A21
Chromosome6 (Build37)
Map Location 123,611,870 - 123,612,219
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043805, Nanog, LOC100038891, Slc2a3, LOC100043502, D530008I22, LOC100043505, Foxj2, C3ar1, Necap1, EG384482, Clec4a1, Clec4a3, Clec4a4, Clec4b1, Clec4a2, Clec4b2, Ppia-ps6_1344.1, Clec4n, Clec4d, Clec4e, EG232358, EG667180, LOC626436, EG546912, LOC100043511, Vmn2r-ps32, EG546913
Downstream geneLOC100043516, EG435916, EG243628, EG545874, LOC384484, LOC623282, V2r1b, EG384486, Vmn2r-ps34, Vmn2r27, LOC623374, EG622297, Cd163, LOC100043530, 1700013D24Rik, 1700027F06Rik, 1700060L04Rik, Pex5, Clstn3, C1rl, C1r, C1s, LOC667277, EG317677
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360A21.T7 (MSMg01no360_a21.b1)MSMg01-360A21.TJ (MSMg01no360_a21.g1)
ACCAG469322AG469323
length748786
length of high quality
(start - end)		655 (44 - 698)385 (74 - 458)
definitionCHROMAT_FILE: MSMg01no360_a21.b1 PHD_FILE: MSMg01no360_a21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:42 2005CHROMAT_FILE: MSMg01no360_a21.g1 PHD_FILE: MSMg01no360_a21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:42 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATCATTTTATCACCAGAGTATACTCTATTGTGTAAATGTACCACATT
TTCTTTATCCATTCTAGTGTTGAAAGACATCTGGGTTCTTTCCAGCTTCT
GACTATCATAAATAAGGCTGCTATGAACATAGTAGAACATTTGTTCTTGT
TATCTCTTGGAGAATCTTTTGGGTATATGCCCAGGAGTTGTATACCTGGG
TGCTCAGGTAATATTATGTACAATTTTCTGACTGCTTCCTTCTACCAACT
AGTTTTTCCTTCTTTATTTGGTATTAAAGATGTGCTAAGGGCTGAGCAGT
ACCACAACTAGAAAAGCTATTTTCAGTAAATAACACAGTCTCTGGATGCA
CAGTAAAATTAAATATACAGGACAGATATTTCTGAATTTGAATTTGAATT
CTTTATGCACATTCATTCTCTTATTTTTTGGAACTGTTCACCCTGAATAT
CTCAGTGATATGATAAAAAGAGTAATGTGGAACTTTATGGTCCTCAAGAA
ACCAAAAAAATTTTCTCCAATGCAAAACACCAGGTACATTAACCAGTTCA
AGTCAGGTCTCATGTTCAGGATGAGTTTGGTAGCACAATAAGTGAATCAA
CAGTATTAATACAAATACTTTTATTTGGCTACAGTTTGATTGGGTTTTGG
TTTTCTTTGNTTTTCTTTACCTGATTTTGTATTTTTATTTCTCCAGGN

CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTACCTCTCAGTGAATTACAGTCCAG
GTTCTGAACATTATTTTCCTCTTTTAGCTCCATCCATTCTTACAAAAGAG
CCAACTTGGGAGAAGCTCCAATGAGGAGAACATTGTGAACAAAGAAATTT
TGGCAACTGAGTTTGACATCTTTTTTTGTTTGTTTGTTTTGTTTTGTTTT
GTTTTGTTTTGTTTTGTTTTGTTTTTTGTTTTTTAGAGACAGGGTTTCTC
TGTGTAGCCTTGGCTGTTCTGGAACTCATTCTGTAGACCAGGCTGGCCTC
GAACTCACAAATCCACTTGACTCTGCCCCCCAAGTGCTGGAATTAAAAGT
GAGTGCCACCATGCCCAGCTGAGTTTGACATCTTTAATTACCAGTCTCTG
CCGAGTGGGACCAATGCTCAAGTGAAGGTTGGCGAGATTGTCTTTGAGTC
TCACAGTGGTCAACATTTTTCATTAAATGAGAAATTTCCAAACTTGGGGG
AAAAATCCCCACGGAGGTAATGGTTTTTGAGTTCCGTACCTTGGGGCGTT
CACAGAATGAAATTCCTCCCCGAGCAGGGTTGTGCAAACGACAAACCCTT
TTGGGCCAAGGCCAAAAAAATTTATTTGCCCCACCCCCTCGGGTTCGGGG
GCTCCGAGAAATAAAAAAAATTTACCTCCCCATAGGGTTCTCTTTCTTGG
GGTCTAAAAAAGCAAAATACCCTCTTGGCGCCATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_a21.g1 MSMg01no360_a21.g1 CHROMAT_FILE:
MSMg01no360_a21.g1 PHD_FILE: MSMg01no360_a21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:42 2005
         (385 letters)



>mm_chr6_123611870_123612654
          Length = 785

 Score =  623 bits (322), Expect = 0.0
 Identities = 346/360 (96%), Gaps = 10/360 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttacctctcagtgaattacagtccaggttctgaacattattttcctcttttagctccat 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 350 tttacctctcagtgaattacagtccaggttctgaaaattattttcctcttttagctccat 291

                                                                       
Query: 61  ccattcttacaaaagagccaacttgggagaagctccaatgaggagaacattgtgaacaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 ccattcttacaaaagagccaacttgggagaagctccaatgaggagaacattgtgaacaaa 231

                                                                       
Query: 121 gaaattttggcaactgagtttgacatctttttttgtttgtttgttttgttttgttttgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 gaaattttggcaactgagtttgacatctttttttgtttgtttgttttgttttgttttgtt 171

                                                                       
Query: 181 ttgttttgttttgttttgttttttgttttttagagacagggtttctctgtgtagccttgg 240
           ||||||||||||          ||||||||||||||||||||||||||||||||||||||
Sbjct: 170 ttgttttgtttt----------ttgttttttagagacagggtttctctgtgtagccttgg 121

                                                                       
Query: 241 ctgttctggaactcattctgtagaccaggctggcctcgaactcacaaatccacttgactc 300
           |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 120 ctgttctggaactcattctgtagaccaggctggcctcgaactcagaaatccacctgactc 61

                                                                       
Query: 301 tgccccccaagtgctggaattaaaagtgagtgccaccatgcccagctgagtttgacatct 360
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 60  tgccccccaagtgctggaattaaaagtgtgtgccaccatgcccagctgagtttgacatct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 785
Length adjustment: 9
Effective length of query: 376
Effective length of database: 776
Effective search space:   291776
Effective search space used:   291776
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |