BAC Information

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BAC

Clone NameMSMg01-360B18
Chromosome6 (Build37)
Map Location 115,356,489 - 115,356,877
singlet/doubletsinglet
Overlap genenone
Upstream geneHrh1, Atg7, Vgll4, 1500001M20Rik, LOC100043420, Syn2, Timp4
Downstream genePparg, Tsen2, 2510049J12Rik, Mkrn2, Raf1, LOC100043759, D830050J10Rik, Tmem40, EG620848, Cand2, Rpl32, BC060267, Mbd4, Ift122, Rho, H1foo, Plxnd1, Tmcc1, LOC100043425, EG666634, EG666648, D6Wsu116e, Anubl1, March8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360B18.T7 (MSMg01no360_b18.b1)MSMg01-360B18.TJ (MSMg01no360_b18.g1)
ACCAG469364AG469365
length779766
length of high quality
(start - end)		398 (47 - 444)407 (74 - 480)
definitionCHROMAT_FILE: MSMg01no360_b18.b1 PHD_FILE: MSMg01no360_b18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:46 2005CHROMAT_FILE: MSMg01no360_b18.g1 PHD_FILE: MSMg01no360_b18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATTCTCATCTTTCATTCCTCTTAGCCTTGTTGAGTAAGTCTCTG
AGATAAAGGGGTTCCATTAAGATGATTAGATACTTTATCAACTCCTAGCC
AGGACATGTATTAATGAAACAAGGCACTGTTAGCAATGCATATAGGACCT
TGGGCATGAACTGAAACTGTCATAGGCAAACCAGGTCATCATCACTTTAA
GATTAAGCAAGGTCAGGAGATGAGGAGAGAATAGGTGTCCTGATGCCTTT
GGTCCTTCACAACTAGCAACTAGGTCAGTGCTGTCTTTGTTGTTGTTTGT
TTGTCTCTTATAACTTTCCCCTTCAGACATTTAGCTCATTGATCCAGGAC
ATATAGCACCTTTTTTTTTTTTTTTAAAAAGAAGCCTGTAGTAGAATGTA
GTGTTGTAAAATTTCTTCTCTTTCTTTCTCTATCAAACACTAAAGGTTCA
CACGGGCAGTTGTTTTGCAAAGGAGGGTGGGAATTGCACAGTTTTTGCCT
GGGGCTCTCTTGCATTAAGGAGGGTTGTATCTGGGCCCTTCTCAAGCCCC
CGATGTGTAAAAATTATGGCCCCCCTAAAATAACAAACCCCTTTTTAAAA
CCTTCCCCCATCAATAAAAAAACCAAAAGCCCATTTTTGTGTTTTTCAGG
CTTCCCCCCCCCGGGAAAACTTTTTTCCCCCCAGAAAACCCAACTTTCCT
TAAAAAAAAAAAACAAAAAAAATTGGTTG

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTTATATATAGTTCAGAGGTTTGGTC
CATTATCATGGCAGGAAGCATGGTGGCACACAGGCAGACATGGTGCTGGA
GAGATAGCTGAGAGTTTTACATCCAGATCAGCAGGAAGAGAGAGAAAAAC
TGAGCCTGGCTTGAATACTTGAAACCTCAAAGTCCACTCCCAGTGACACA
CTTCTTCCAATAAGGCCACACCTCCTAATAGTGACACTCCCTGAGCTTAT
GGGGGGGTGGGCATTTCATCCAAAACACAGTGGCAGTATTATTAATCAGA
TCAACCTAGATATTCATCAGTGGATAAAGAAAATGTGGTATATATACTCA
ATGGGGTTTTATTTGACCAGAAAGAAGAACATGAGTGTGTAATTTGCAGG
AAACTAGATGGCACAAAAATTCCTATTGGACAAGATAAGCCAGACTTAGA
AAAACAATATTCTATGAGAGAGAGACCATTGAGAAAAGGAAGGGGTCTCG
TATGAGCTTGAAATGGAGACTTGGGACAGAATTGATGGGGGGTAGAAATT
ACCCACGACTTTTTTTTCTTCCCTGATACGGCCCTTTGGACCCCCCCTTT
TGTCTTTTATGGACGCCTTTGTAAATTTAAAGTTGGGGAGTGTTTCTTTC
TCCTACCCACCGCGCTAATTTACAATCAATAAGGCTTATTTATTCGCTGT
TTAACTCTCTTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_b18.b1 MSMg01no360_b18.b1 CHROMAT_FILE:
MSMg01no360_b18.b1 PHD_FILE: MSMg01no360_b18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:46 2005
         (398 letters)



>mm_chr6_115356285_115357077
          Length = 793

 Score =  723 bits (374), Expect = 0.0
 Identities = 387/394 (98%), Gaps = 5/394 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattctcatctttcattcctcttagccttgttgagtaagtctctgagataaaggg 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 gaattcattctcatcattcattcctcttagccttgttgagtaagtctctgagataaaggg 534

                                                                       
Query: 65  gttccattaagatgattagatactttatcaactcctagccaggacatgtattaatgaaac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 gttccattaagatgattagatactttatcaactcctagccaggacatgtattaatgaaac 474

                                                                       
Query: 125 aaggcactgttagcaatgcatataggaccttgggcatgaactgaaactgtcataggcaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 aaggcactgttagcaatgcatataggaccttgggcatgaactgaaactgtcataggcaaa 414

                                                                       
Query: 185 ccaggtcatcatcactttaagattaagcaaggtcaggagatgaggagagaataggtgtcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ccaggtcatcatcactttaagattaagcaaggtcaggagatgaggagagaataggtgtcc 354

                                                                       
Query: 245 tgatgcctttggtccttcacaactagcaactaggtcagtgctgtctttgttgttgtttgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 tgatgcctttggtccttcacaactagcaactaggtcagtgctgtctttgttgttgtttgt 294

                                                                       
Query: 305 ttgtctcttataactttccccttcagacatttagctcattgatccaggacatatagcacc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 293 ttgtctcttataactttccccttcagacatttagctcattgatccaggacatatagcac- 235

                                             
Query: 365 tttttttttttttttaaaaagaagcctgtagtag 398
               |||||||||| |||||||||||||||||||
Sbjct: 234 ----ttttttttttaaaaaagaagcctgtagtag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 793
Length adjustment: 9
Effective length of query: 389
Effective length of database: 784
Effective search space:   304976
Effective search space used:   304976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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