BAC Information

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BAC

Clone NameMSMg01-360D02
Chromosome6 (Build37)
Map Location 24,100,385 - 24,301,244
singlet/doubletdoublet
Overlap geneSlc13a1, LOC100041094
Upstream geneEG668044, EG546894, EG668053, EG384356, Fezf1, Cadps2, Rnf133, Rnf148, Tas2r118, LOC100041082
Downstream geneIqub, Ndufa5, Asb15, EG626715, Lmod2, Wasl, 4932701A20Rik, Hyal4, Spam1, Hyal5, 6332401O19Rik, LOC384358
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360D02.T7 (MSMg01no360_d02.b1)MSMg01-360D02.TJ (MSMg01no360_d02.g1)
ACCAG469427AG469428
length734744
length of high quality
(start - end)		480 (42 - 521)446 (73 - 518)
definitionCHROMAT_FILE: MSMg01no360_d02.b1 PHD_FILE: MSMg01no360_d02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:53 2005CHROMAT_FILE: MSMg01no360_d02.g1 PHD_FILE: MSMg01no360_d02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,100,385 - 24,100,854)(24,300,799 - 24,301,244)
sequence
ATTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGC
GGAATTCTGTGGGATTACCGAAATGTGCAAGATCTTAGGATGTGAATGAA
TGGCCCCTCTATTTGGGCGAAAGGAGCCAGCTATAAATGTCAGCAAGAGA
AGATGGTCACGTTTCTCCTATAGACAAACATGACTCAAGAAGCTATGACC
TGTTTGTTCATTCAAGATGGACAGACATGCAGACTCTCAGAGAAGGAGTA
CTCGGATATTTAGAGCACTTACAAAGAAACCTTATGTCAGGATCATGGCT
CCCTTTAAGGACTTTTCTCAAATGATGTCACCACATAAGTAAGTAATCAA
AATTTAACAGCATTTGAAGAACTTACCTGTGAAGAACGCATGATCCCAAA
CATGGGGAACATTAACCCAGGCAGTAGAGCTGTGATTGACAGGGGCAAGG
CTTCTGTGATCCAAAATATGGCAATAACAAAGAGGATGTAGGCACATTGT
GCTTCCTGCAAAGAACCAAGACAAGACATAAGGTGAAAAAAAAAATCATC
ACCTGAAATCAACCTTCAAATCATGACTGCTTTTTCTGGACGGTGCTTAA
TGAGAGGGAGCTGTGGGAGTTTCTGCAGTATTAACGTTCCACCTAGTAGT
TATCTTTAGGGGTTTTGGAACCATAAGCAATTATGGTGGAAATGAAAGTC
TTGTAAACTCTCTCATTTCCTTCTCTATTTCCCC

CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCCTTTCTAGAATAATATCTTGTTTACA
ATAAGATAATTCCCTTGTGTGCTTGCTGTGACCTGGGACAGGTTAGTGCA
TATAGAGAGATTTTATACAATACAGTCCCAGCTGTTGCGACGGTGTAGCC
TTCTGCAGTTTTTCAGAACAGCCTCTAGAGGTCAGGATTGAGGCACTGTG
CATAGCTTAGCCTCCCCTCTCACTACCTAGCCAGTTATAATGGGATCAGC
GCTGAGACTTAGTTCTCCATATGGTGACATTCATACACTGTAAGGATTGT
TCCCCCCATAAGATTTAATTATAACAATCTAATATGCAATAATAATTCGC
TGCTATTAGACATTTAAAATATATATGATTTATATATGTAGTCCGCATTG
ATTCCTTTTAAAATGAAGAAATCGAGGCTCTAACGCCGTTTAAGCATTTA
CTTAGACTTTGATATATACAAGCATTTATAAAATAACATTCTGGAATTAT
TTAAGTACTTCAGCTATATAATAATACATGTTTTTTTATGTTTTTTCTGA
AGTTCCCCATTATTCCTTTTTGCTTTCATTCTCCTAATTCCAAAGTATTT
TTAAAACCTCCCCCTAATTATTTTGTTCATCCTTTGGGAATTTTTACTAT
CTATTTTTGCCATTTTTTTACCGCCATTTTTCCCACTTTTTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_d02.b1 MSMg01no360_d02.b1 CHROMAT_FILE:
MSMg01no360_d02.b1 PHD_FILE: MSMg01no360_d02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:53 2005
         (480 letters)



>mm_chr6_24100175_24101054
          Length = 880

 Score =  886 bits (458), Expect = 0.0
 Identities = 467/470 (99%)
 Strand = Plus / Plus

                                                                       
Query: 11  gaattctgtgggattaccgaaatgtgcaagatcttaggatgtgaatgaatggcccctcta 70
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 gaattctgtgggattagggaaatgtgcaagatcttaggatgtgaatgaatggcccctcta 270

                                                                       
Query: 71  tttgggcgaaaggagccagctataaatgtcagcaagagaagatggtcacgtttctcctat 130
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tttgggcaaaaggagccagctataaatgtcagcaagagaagatggtcacgtttctcctat 330

                                                                       
Query: 131 agacaaacatgactcaagaagctatgacctgtttgttcattcaagatggacagacatgca 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 agacaaacatgactcaagaagctatgacctgtttgttcattcaagatggacagacatgca 390

                                                                       
Query: 191 gactctcagagaaggagtactcggatatttagagcacttacaaagaaaccttatgtcagg 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gactctcagagaaggagtactcggatatttagagcacttacaaagaaaccttatgtcagg 450

                                                                       
Query: 251 atcatggctccctttaaggacttttctcaaatgatgtcaccacataagtaagtaatcaaa 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 atcatggctccctttaaggacttttctcaaatgatgtcaccacataagtaagtaatcaaa 510

                                                                       
Query: 311 atttaacagcatttgaagaacttacctgtgaagaacgcatgatcccaaacatggggaaca 370
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 atttaacagcatttgaagaacttacctgtgaagaacgcatgatcccaaacatggggaaca 570

                                                                       
Query: 371 ttaacccaggcagtagagctgtgattgacaggggcaaggcttctgtgatccaaaatatgg 430
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ttaacccaggcagtagagctgtgattgacaggggcaaggcttctgtgatccaaaatatgg 630

                                                             
Query: 431 caataacaaagaggatgtaggcacattgtgcttcctgcaaagaaccaaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 caataacaaagaggatgtaggcacattgtgcttcctgcaaagaaccaaga 680


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no360_d02.g1 MSMg01no360_d02.g1 CHROMAT_FILE:
MSMg01no360_d02.g1 PHD_FILE: MSMg01no360_d02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:53 2005
         (446 letters)



>mm_chr6_24300599_24301444
          Length = 846

 Score =  847 bits (438), Expect = 0.0
 Identities = 444/446 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctttctagaataatatcttgtttacaataagataattcccttgtgtgcttgctgtgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 tcctttctagaataatatcttgtttacaataagataattcccttgtgtgcttgctgtgac 587

                                                                       
Query: 61  ctgggacaggttagtgcatatagagagattttatacaatacagtcccagctgttgcgacg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 ctgggacaggttagtgcatatagagagattttatacaatacagtcccagctgttgcgacg 527

                                                                       
Query: 121 gtgtagccttctgcagtttttcagaacagcctctagaggtcaggattgaggcactgtgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gtgtagccttctgcagtttttcagaacagcctctagaggtcaggattgaggcactgtgca 467

                                                                       
Query: 181 tagcttagcctcccctctcactacctagccagttataatgggatcagcgctgagacttag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 tagcttagcctcccctctcactacctagccagttataatgggatcagcgctgagacttag 407

                                                                       
Query: 241 ttctccatatggtgacattcatacactgtaaggattgttccccccataagatttaattat 300
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 406 ttctccatatggtgacattcatacgctgtaaggattgttccccccataagatttaattat 347

                                                                       
Query: 301 aacaatctaatatgcaataataattcgctgctattagacatttaaaatatatatgattta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 aacaatctaatatgcaataataattcgctgctattagacatttaaaatatatatgattta 287

                                                                       
Query: 361 tatatgtagtccgcattgattccttttaaaatgaagaaatcgaggctctaacgccgttta 420
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 286 tatatgtagtccgcattgattccttctaaaatgaagaaatcgaggctctaacgccgttta 227

                                     
Query: 421 agcatttacttagactttgatatata 446
           ||||||||||||||||||||||||||
Sbjct: 226 agcatttacttagactttgatatata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space:   364496
Effective search space used:   364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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