Query= MSMg01no360_e04.b1 MSMg01no360_e04.b1 CHROMAT_FILE:
MSMg01no360_e04.b1 PHD_FILE: MSMg01no360_e04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:58 2005
(410 letters)
>mm_chr6_126770124_126770933
Length = 810
Score = 692 bits (358), Expect = 0.0
Identities = 390/406 (96%), Gaps = 9/406 (2%)
Strand = Plus / Minus
Query: 5 gaattctgtcttctctccgggcagaaagggagtttgtaattgctgaccttctaaagggga 64
||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 526 gaattctgtcttctc---------aaagggagtttgtaattgctgatcttctaaagggga 476
Query: 65 tctgggaggttattagagttggcttaggctgaggggaattccaaggcttatggccatctt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 tctgggaggttattagagttggcttaggctgaggggaattccaaggcttatggccatctt 416
Query: 125 gattgggggaggggaaacattaagtccatcaatgtgaccagcaccggtggtggcagagaa 184
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 415 gattgggggaggggaaacattaagtccatcaatgtgaccggcaccggtggtggcagagaa 356
Query: 185 aatggactgccagccatctgctcctgggaagagcaggagggacaaaatctagtgtgcaga 244
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 355 aatggattgccagccatctggtcctgggaagagcaggagggacaaaatctagtgtgcaga 296
Query: 245 gggaagaaaagcacgtcaaagctaacccctcagagatacagagtatgacttcattcattc 304
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 295 gggaagaaaagcacgtcaaagcaaacccctcagagatacagagtatgatttcattcattc 236
Query: 305 atttatggatagggtcgtgcgtatcccaggctggccttggactcactgagtacttaactc 364
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 atttatggatagggtcgtgtgtatcccaggctggccttggactcactgagtacttaactc 176
Query: 365 aatgaccttgggtttaggatccttgaggcttctgcctcctgagtgc 410
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 aatgaccttgggtttaggatccttgaggcttctgcctcctgagtgc 130
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 810
Length adjustment: 9
Effective length of query: 401
Effective length of database: 801
Effective search space: 321201
Effective search space used: 321201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no360_e04.g1 MSMg01no360_e04.g1 CHROMAT_FILE:
MSMg01no360_e04.g1 PHD_FILE: MSMg01no360_e04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:58 2005
(458 letters)
>mm_chr6_126586284_126587141
Length = 858
Score = 874 bits (452), Expect = 0.0
Identities = 455/456 (99%)
Strand = Plus / Plus
Query: 1 catgataagatccttaaaaattatctttaattgatgccaaatatgaacagatcatgaagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgataagatccttaaaaattatctttaattgatgccaaatatgaacagatcatgaagt 260
Query: 61 gacagaaccaagtaaaattgcatagatgaaaactatgcgcatccttaggttctccattcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacagaaccaagtaaaattgcatagatgaaaactatgcgcatccttaggttctccattcg 320
Query: 121 taactttcagtatcctcaacccaacatagtaaacggttagggcagggcaagtgcaggggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taactttcagtatcctcaacccaacatagtaaacggttagggcagggcaagtgcaggggt 380
Query: 181 gatgagatgagacgtgtccttaactcaaggaggaagcaattggcaaagccaagaaagaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatgagatgagacgtgtccttaactcaaggaggaagcaattggcaaagccaagaaagaaa 440
Query: 241 acagaacttcagaatcagcttcaatggtttgtcgtcctgagggtgcacatcagattaata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acagaacttcagaatcagcttcaatggtttgtcgtcctgagggtgcacatcagattaata 500
Query: 301 cttctagactgtagttttagcctcaggaatagtctatctttcatcttagaggtatgtcat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttctagactgtagttttagcctcaggaatagtctatctttcatcttagaggtatgtcat 560
Query: 361 agagaccatgtcaccaacttatggctgctttgtacgtgactcctaaacagtgcattgaag 420
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 561 agagaccatgtcaccaacttatggctgcttcgtacgtgactcctaaacagtgcattgaag 620
Query: 421 aaggagacttctgcaagttttgaagaggaaagacag 456
||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaggagacttctgcaagttttgaagaggaaagacag 656
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space: 379904
Effective search space used: 379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
