Query= MSMg01no360_e21.b1 MSMg01no360_e21.b1 CHROMAT_FILE:
MSMg01no360_e21.b1 PHD_FILE: MSMg01no360_e21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:01 2005
(484 letters)
>mm_chr6_49327118_49328001
Length = 884
Score = 688 bits (356), Expect = 0.0
Identities = 475/581 (81%), Gaps = 102/581 (17%)
Strand = Plus / Plus
Query: 5 gaattctttacagacttcttattttttggttgatttttttcgagacagggtttctctgta 64
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 105 gaattctttacagactttttattttttggttga-ttttttcgagacagggtttctctgta 163
Query: 65 tagccctggctgtcctggaactcactttgtagaccaggctggcctcgaactcagaaatct 124
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 164 tagccctggctgtcctggaactcactttgtagaccaggctggcctcaaactcagaaatct 223
Query: 125 gcctgcctctgcctcccaagtgctgggattaaaggcgtggccaccaccgcccagctt--- 181
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 224 gcctgcctctgcctcccgagtgctgggattaaaggcgtggccaccaccgcccagcttcgt 283
Query: 181 ------------------------------------------------------------ 181
Sbjct: 284 tatagacttttaatttttttttttttttttttttttttttttttttggtttttcaagaca 343
Query: 182 -------------------------------------cgttatagacttttaaaaaagtg 204
|||||||||||||||||||||||
Sbjct: 344 gggtttctctgtatagccctggctgtcctggaactcacgttatagacttttaaaaaagtg 403
Query: 205 attttataattt-aaaaaaaaaaaagcaacaacctgacaaacatttcagattttctgact 263
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 attttataatttaaaaaaaaaaaaagcaacaacctgacaaacatttcagattttctgact 463
Query: 264 gtgggtgctcagacagtaaattctacatgtagtagttccaggtcagtgaacagatctgaa 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gtgggtgctcagacagtaaattctacatgtagtagttccaggtcagtgaacagatctgaa 523
Query: 324 gcatttcttactgcaagcagtctggctaaagagaactcaacctgggaaacagtttactga 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 gcatttcttactgcaagcagtctggctaaagagaactcaacctgggaaacagtttactga 583
Query: 384 cagtagcagagtgactgattcatccgacaagcatggaattagttgtataanacttaggtg 443
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 584 cagtagcagagtgactgattcatccgacaagcatggaattagttgtataaaacttaggtg 643
Query: 444 ctttggtaaccatccacaggtataagtagtgtgagcaggta 484
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 ctttggtaaccatccacaggtataagtagtgtgagcaggta 684
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space: 414276
Effective search space used: 414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no360_e21.g1 MSMg01no360_e21.g1 CHROMAT_FILE:
MSMg01no360_e21.g1 PHD_FILE: MSMg01no360_e21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:01 2005
(396 letters)
>mm_chr6_49506858_49507653
Length = 796
Score = 750 bits (388), Expect = 0.0
Identities = 394/396 (99%)
Strand = Plus / Minus
Query: 1 ctgggacgctactggtccttagcagtaggactaggtcaaggtacaaacattgtgaatttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 ctgggacgctactggtccttagcagtaggactaggtcaaggtacaaacattgtgaatttt 537
Query: 61 tataaaacatattttactcagagagctaaagagtaaaattatgttatgacttcctttata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 536 tataaaacatattttactcagagagctaaagagtaaaattatgttatgacttcctttgta 477
Query: 121 ggaaaccgaatcaagcagctcatcttcttgatgaagagcatgcttgtatgtgttcagccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 ggaaaccgaatcaagcagctcatcttcttgatgaagagcatgcttgtatgtgttcagccc 417
Query: 181 tggtgatggagagcatgcttatacgtgttcagtgctggtgataaagcatccttctacgga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tggtgatggagagcatgcttatacgtgttcagtgctggtgataaagcatccttctacgga 357
Query: 241 gagcatgattgtacgtgttcagcgttggtgatggagcatcctcctaataacaggcttggc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gagcatgattgtacgtgttcagcgttggtgatggagcatcctcctaataacaggcttggc 297
Query: 301 tgaggtaacgggtgacggcatgtgtgctaagtatcattcagggacccaagaccaatgcct 360
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 tgaggtaacgagtgacggcatgtgtgctaagtatcattcagggacccaagaccaatgcct 237
Query: 361 atcgctgctctagaaaatcagatttgagctcagctc 396
||||||||||||||||||||||||||||||||||||
Sbjct: 236 atcgctgctctagaaaatcagatttgagctcagctc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 796
Length adjustment: 9
Effective length of query: 387
Effective length of database: 787
Effective search space: 304569
Effective search space used: 304569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
