BAC Information

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BAC

Clone NameMSMg01-360F19
Chromosome6 (Build37)
Map Location 142,306,583 - 142,307,038
singlet/doubletsinglet
Overlap geneBC027061
Upstream genePde3a, Slco1c1, Slco1b2, EG435927, Slco1a4, LOC100042750, EG664913, Slco1a1, EG625716, Slco1a6, Slco1a5, Iapp
Downstream geneRecql, Golt1b, B230216G23Rik, Gys2, Ldhb, Kcnj8, Abcc9, 5330439B14Rik, Cmas, Gm766, EG665037, St8sia1, LOC665056, 5730419I09Rik, Etnk1, D6Ertd474e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360F19.T7 (MSMg01no360_f19.b1)MSMg01-360F19.TJ (MSMg01no360_f19.g1)
ACCAG469555AG469556
length766745
length of high quality
(start - end)		462 (46 - 507)456 (76 - 531)
definitionCHROMAT_FILE: MSMg01no360_f19.b1 PHD_FILE: MSMg01no360_f19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:05 2005CHROMAT_FILE: MSMg01no360_f19.g1 PHD_FILE: MSMg01no360_f19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGGAATTCTCTTTACTTCTTTCTTTATTTCTTCCCTGACCAACT
TATCAGTGAGTAGAGTGTTGCTCAGTTTCCAGGTGTATGTGGATTTTCTG
TTATTTTTGTTTTTATTGAAGATCAGCCTTAGTCCATGGTGATATGATAG
GATGAATGGTATTATTTCAATCTTCTTGTATCAGTTAAGGCTTGTTTTGT
GACCAACTACATGGTTGATTTTGGAGAAGGTACCATGAGGTGCTAAGAAG
TAGGTGCATTCTTTTTTTTAGGGTGAAATGTTCTATAGATATCTGTTAAA
CCCATAATGGTTTATCTTTATTTTTCACTGTGTCTCTGTTTAGTTTTTGT
TTCTAGGACCTGTCCAATAACAAGAATGGGCTATTGAAGTCTCCTACTAT
TATTGTATGGGCTTTAATGTGTGTTTTGTGCTTCAGTAAAGTTTCTTTTA
TTAATGTGGGTGCCCTTGAATTTGGGGCATATATGTTTAGAATTGAGGCT
TTCTCTTGGTGCATTTTCCCTTTGATGAATATGAAAAGTCCTTTCTTCTT
TTCCATCATAAATTTTTGAATGAAAGTCCATTTTTTATGGAAATTTTGAT
TTCTCCTTCAGTTTTGTTTTTTGGGGCATTTGGTTTGTAAAATTTTTTTT
TCTAGCCTTTTTCCCCAAAGGAAGGAGCCTAATTTTTTTTTTTAAAAAGG
TGTTCCTCTGAAAGAA

NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACCTTACATTGTTTCTATGAAGAAA
AGGGTGTACGTTTGGGGTGACTCCTGTAGCGCTGACAAGGAAATCACAGC
CGTATATTGTCCCATTGGTCAGTTCCACATACACAGGCCACATTTCTTTA
AAGAAAAGAAAAAGGTTCTCAAGTGTCATCTGTAGCAGTTATCCACAGCG
TCATGTGAATGTTACAGGAACGGCGAGAAGACAGACGGCTTCAGAAGGAA
GGCCACTTTATTTTCTGAAGGTCCATTGGCCGAGACAACTGAGCGCAATG
GCAGTCTTGTACCTGGCAGCTTCAAGAGCACGGTACTCTAAAGGAGACTA
AGCACGATCACTTTCTAAACTACCTGTGAAACAGTTTGATTAACACTTCA
TGTCACTCAGTGCTTAATCCTCTTTTTTTCTTTTTCTTCCTTTATCAATG
ATTTATTTTATGATATGAGTACACTGTTGCTGCCTTCAGACACACCAGAC
AAGAGCATCAGATCCCATTACAGATGGTTGTGAGCCACCGTGTGGGAGAG
CAGGCTCTCAACTGCTGAGGTACCTCTCCGGCGCACCCAATTTTTCTTGG
GGAAGGTTTTCCCCCCTGGTTAAAAACCCTGTGAATTCTACCACCTCTTT
TTTTTAAAACAGTTGGAAACAAATAGAAATTTTTTGCCCTGACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_f19.g1 MSMg01no360_f19.g1 CHROMAT_FILE:
MSMg01no360_f19.g1 PHD_FILE: MSMg01no360_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:05 2005
         (456 letters)



>mm_chr6_142306383_142307238
          Length = 856

 Score =  882 bits (456), Expect = 0.0
 Identities = 456/456 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   accttacattgtttctatgaagaaaagggtgtacgtttggggtgactcctgtagcgctga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 accttacattgtttctatgaagaaaagggtgtacgtttggggtgactcctgtagcgctga 597

                                                                       
Query: 61  caaggaaatcacagccgtatattgtcccattggtcagttccacatacacaggccacattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 caaggaaatcacagccgtatattgtcccattggtcagttccacatacacaggccacattt 537

                                                                       
Query: 121 ctttaaagaaaagaaaaaggttctcaagtgtcatctgtagcagttatccacagcgtcatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 ctttaaagaaaagaaaaaggttctcaagtgtcatctgtagcagttatccacagcgtcatg 477

                                                                       
Query: 181 tgaatgttacaggaacggcgagaagacagacggcttcagaaggaaggccactttattttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 tgaatgttacaggaacggcgagaagacagacggcttcagaaggaaggccactttattttc 417

                                                                       
Query: 241 tgaaggtccattggccgagacaactgagcgcaatggcagtcttgtacctggcagcttcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tgaaggtccattggccgagacaactgagcgcaatggcagtcttgtacctggcagcttcaa 357

                                                                       
Query: 301 gagcacggtactctaaaggagactaagcacgatcactttctaaactacctgtgaaacagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gagcacggtactctaaaggagactaagcacgatcactttctaaactacctgtgaaacagt 297

                                                                       
Query: 361 ttgattaacacttcatgtcactcagtgcttaatcctctttttttctttttcttcctttat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 ttgattaacacttcatgtcactcagtgcttaatcctctttttttctttttcttcctttat 237

                                               
Query: 421 caatgatttattttatgatatgagtacactgttgct 456
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 caatgatttattttatgatatgagtacactgttgct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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