Query= MSMg01no360_h18.b1 MSMg01no360_h18.b1 CHROMAT_FILE:
MSMg01no360_h18.b1 PHD_FILE: MSMg01no360_h18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:14 2005
(492 letters)
>mm_chr6_93697742_93698635
Length = 894
Score = 884 bits (457), Expect = 0.0
Identities = 482/491 (98%), Gaps = 2/491 (0%)
Strand = Plus / Plus
Query: 4 ggaattctctcagctaccggtctatctcaggcacaccatcattcaggtccaaaagaaaag 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctcagctacaggtctatctcaggcacaccatcattcaggtccaaaagaaaag 263
Query: 64 agaacaagacaaagccaaacccccaatctcagtcatgtgacattctccctgaatttcagc 123
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 264 agaacaagacaaagccaaacccccaatctcagccatgtgacattctccctgaatttcagc 323
Query: 124 cgatgaggttccacagctactgcgctgccaaagcctccttaaagaaagcagatggtcttc 183
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgatgaggttccacagctactgcgctgccaaagcctccttaaagaaagcagatggtcttc 383
Query: 184 gctttgtgccatggtttccttttctattttagagtgtttactataatgtgctaccataga 243
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 384 actttgtgccatggtttccttttctattttggagtgtttactataatgtgctaccataga 443
Query: 244 catggcttttatgtatagggctaactagcagaaactttactttttagccaaatggaaggc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 catggcttttatgtatagggctaactagcagaaactttactttttagccaaatggaaggc 503
Query: 304 tcaaaataaaaaa--tcatggataataccaggaagtacataatggtcacaaagtgtaagg 361
||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 504 tcaaaataaaaaaaatcatggataataccaggaagtacataatggccacaaagtgtaagg 563
Query: 362 tgacaaaaatgtatcactattttgaaaattcaaggtcattactttaaatggaattccaaa 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgacaaaaatgtatcactattttgaaaattcaaggtcattactttaaatggaattccaaa 623
Query: 422 gtcatctgatgtgtattatttagctgcagcttttaacatattgagaaatagctaacatgt 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gtcatctgatgtgtattatttagctgcagcttttaacatattgagaaatagctaacatgt 683
Query: 482 attcattgcta 492
| |||||||||
Sbjct: 684 agtcattgcta 694
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 894
Length adjustment: 10
Effective length of query: 482
Effective length of database: 884
Effective search space: 426088
Effective search space used: 426088
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no360_h18.g1 MSMg01no360_h18.g1 CHROMAT_FILE:
MSMg01no360_h18.g1 PHD_FILE: MSMg01no360_h18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:15 2005
(472 letters)
>mm_chr6_93890933_93891804
Length = 872
Score = 913 bits (472), Expect = 0.0
Identities = 472/472 (100%)
Strand = Plus / Minus
Query: 1 agtaattgcagactcatggttgttctccatgtaatttttcccctacttagattccaattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 agtaattgcagactcatggttgttctccatgtaatttttcccctacttagattccaattt 613
Query: 61 aagaaatggggatagagcaaatgagcacaccattgcttgacacatctgtggtgttaccat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 aagaaatggggatagagcaaatgagcacaccattgcttgacacatctgtggtgttaccat 553
Query: 121 ggttacagtgttggtgagctttcccatttattccccactcccaccctccccattgatctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ggttacagtgttggtgagctttcccatttattccccactcccaccctccccattgatctc 493
Query: 181 ttggacctcactgtgagctaagtggcttgattttaagtttgctactatttaggaagtagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ttggacctcactgtgagctaagtggcttgattttaagtttgctactatttaggaagtagg 433
Query: 241 ccccaaatgaccatagtcttttaaaaacagtgggaaaatcatgtttgtctttgcttgaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ccccaaatgaccatagtcttttaaaaacagtgggaaaatcatgtttgtctttgcttgaaa 373
Query: 301 aaatggtattgatgttccattttttatgaaactgggaaatcgggaatttgtaaagtttaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 aaatggtattgatgttccattttttatgaaactgggaaatcgggaatttgtaaagtttaa 313
Query: 361 ataatgtttggacctaaaaaagaatatacattcactgtacatccagttataaagtgtcag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ataatgtttggacctaaaaaagaatatacattcactgtacatccagttataaagtgtcag 253
Query: 421 gaaataaggcttatttctgtggctagtgtggtgtgtatgtatgtatgtacgt 472
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 gaaataaggcttatttctgtggctagtgtggtgtgtatgtatgtatgtacgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space: 398244
Effective search space used: 398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
