BAC Information

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BAC

Clone NameMSMg01-360J20
Chromosome6 (Build37)
Map Location 22,694,316 - 22,694,781
singlet/doubletsinglet
Overlap genenone
Upstream geneTspan12, LOC100041358, Ing3, A430107O13Rik, LOC667307, Wnt16, D6Wsu176e, LOC100040948, LOC100040959, LOC668018, LOC668022
Downstream genePtprz1, Aass, EG668044, EG546894, EG668053, EG384356, Fezf1, Cadps2, Rnf133, Rnf148
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360J20.T7 (MSMg01no360_j20.b1)MSMg01-360J20.TJ (MSMg01no360_j20.g1)
ACCAG469747AG469748
length759764
length of high quality
(start - end)		467 (48 - 514)468 (77 - 544)
definitionCHROMAT_FILE: MSMg01no360_j20.b1 PHD_FILE: MSMg01no360_j20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:24 2005CHROMAT_FILE: MSMg01no360_j20.g1 PHD_FILE: MSMg01no360_j20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCACCAGACTTCTTACCAGAGACTATGAAAGTTAGAAGATCCTG
GACAGATGTCATACAGACTCTAAGGGAACATAAATGCCAGCCCAGGCTAC
TATACCCAGCAAAACTCTCAATTACTGTATTAGTCAGTGTTCTCTAGAGT
CACAGAACTTATGAGTAGTCTCTATATAGTAAAGGAACTTGTTGATGACT
TACAGTCTGCAGTCTAACTCCCAACAATGGTCAGTAGCAACTGTGAATGG
AAGTCCAAGGATCTAGCGGTTGCTCAGTCCAACACGGCAAACAGTTGAGG
GAGAGAGAGAGAGAGAGCCTTCCTTCTTCCAATGTCCTTATGTATGTCTC
CAGCAGAAGGTGCCACCACACCTTTATTTCCAGATGACCTTGAACTCAGA
GATCTCCCTGTATTAATCTTCTGGAATTCATGGACACTATGCCTCAAGAT
CTCCATACTAAGATCCAGGTCAGAAACTTCTATCTCCTAGCATCCAGATT
AAGATCACTAGTGAGCCTTCCAATTCTGGATTGTATTTCATTCCCAATAT
AGTCCAGTTGACCACCGGGATAAGCCCTACCATTACCTAGATGGGGAAAC
CAAATATTCTTGGACAAACCAAATTTACCCGGATCTTCCCTGGAACCAGC
CCTCCNAGGGTAATAATTGGAAAACCCTTCCCCCGGAAGGAAAAACCCCC
TTAAAAAAA

NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATAGATGCACACTATGGCACTAA
TGAACACCAGTTGTTCCCAACTGTAGAAGAATAACAAGCTATTAATTAAC
GCTAACATCTGGTGATTAGCAAAACTATGAAAAACAGCTTTTTCTCGGGA
TTTGAAGTGTTCCCTTTCTCTGGTCCATTTGTGGGCTCTGGAGGGACCTT
TTGGGGAGCATACAGGAGCATGGAGAGAGGGAGACAGGAAGCTTGCTGTA
AATGAACAACTACCGAGGCCAATCCCTCAGTTCAGGCTTTGCTGAGGAGG
AACTTAGGCCTTCCCCATGGTCTCCCTAAGAAAACTTTTTTTCCAGATCT
GTTTGCAAGGCTGCACACATCACAGTAGCACTGTAGAGAGATAAGGGGCT
TTCCCTGTGGGGTCTGCATCACTGAGATGCAGACTGTTTGCATTGTTGCT
CCTGTGATGCTGCATCTTCTCTTCACACATTGTCTACTGAACAGGACACT
TAGTATCTTCAAATGTCTGAATGATCTTTATGAAAACTTCCAGGACAATA
AAAGTGTTATCAGACTGCTGCAGNATTAATAAATGCTGTTGGATGAAAAC
CGCGGGGGGAAGGGCAAAGAACTGCCCCTGGGTCTGAAGGCCACGGGAAA
AAAGAACACCCCCCCCCTTCTTTTTGGTGGGAAACCTCTTAATTAACTTT
TCAAAGGGTTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_j20.g1 MSMg01no360_j20.g1 CHROMAT_FILE:
MSMg01no360_j20.g1 PHD_FILE: MSMg01no360_j20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:24 2005
         (468 letters)



>mm_chr6_22694116_22694982
          Length = 867

 Score =  872 bits (451), Expect = 0.0
 Identities = 463/467 (99%), Gaps = 1/467 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   catagatgcacactatggcactaatgaacaccagttgttcccaactgtagaagaataaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 catagatgcacactatggcactaatgaacaccagttgttcccaactgtagaagaataaca 607

                                                                       
Query: 61  agctattaattaacgctaacatctggtgattagcaaaactatgaaaaacagctttttctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 agctattaattaacgctaacatctggtgattagcaaaactatgaaaaacagctttttctc 547

                                                                       
Query: 121 gggatttgaagtgttccctttctctggtccatttgtgggctctggagggaccttttgggg 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 aggatttgaagtgttccctttctctggtccatttgtgggctctggagggaccttttgggg 487

                                                                       
Query: 181 agcatacaggagcatggagagagggagacaggaagcttgctgtaaatgaacaactaccga 240
           | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 aacatacaagagcatggagagagggagacaggaagcttgctgtaaatgaacaactaccga 427

                                                                       
Query: 241 ggccaatccctcagttcaggctttgctgaggaggaacttaggccttccccatggtctccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ggccaatccctcagttcaggctttgctgaggaggaacttaggccttccccatggtctccc 367

                                                                       
Query: 301 taagaaaactttttttccagatctgtttgcaaggctgcacacatcacagtagcactgtag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 taagaaaactttttttccagatctgtttgcaaggctgcacacatcacagtagcactgtag 307

                                                                       
Query: 361 agagataaggggctttccctgtggggtctgcatcactgagatgcagactgtttgcattgt 420
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 306 agagataaggggctttccctgtggggtctgcatcactgagatgcagactg-ttgcattgt 248

                                                          
Query: 421 tgctcctgtgatgctgcatcttctcttcacacattgtctactgaaca 467
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tgctcctgtgatgctgcatcttctcttcacacattgtctactgaaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 867
Length adjustment: 10
Effective length of query: 458
Effective length of database: 857
Effective search space:   392506
Effective search space used:   392506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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