Query= MSMg01no360_p21.b1 MSMg01no360_p21.b1 CHROMAT_FILE:
MSMg01no360_p21.b1 PHD_FILE: MSMg01no360_p21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:53 2005
(474 letters)
>mm_chr6_104085490_104086363
Length = 874
Score = 785 bits (406), Expect = 0.0
Identities = 451/466 (96%)
Strand = Plus / Plus
Query: 9 gaattcattgtcttcttaccactgaactagcatttccactttctaccatatggtttctat 68
||||||||||| |||||| || ||||||||||||||||||||| ||||||||||||||||
Sbjct: 209 gaattcattgttttcttagcattgaactagcatttccactttccaccatatggtttctat 268
Query: 69 ctcttcccattcaaatacccttcctttcactttcttttgtttgataaaaacaaaaagatt 128
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 269 ctcttcccattcaaatacccttcctttcactttcttttgtttgattaaaacaaaaagatt 328
Query: 129 ctgagtttttggttccaacctcaagactcttagctctgtatctctcacatttatattaag 188
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 329 ctgagtttttggttccaacctcaagactcttagctctgtgtctctcacatttatattaag 388
Query: 189 caagatcagaagatttatgctacagtaacaaaggaacaggcatccaagacaaaaagacat 248
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 caagatcagaatatttatgctacagtaacaaaggaacaggcatccaagacaaaaagacat 448
Query: 249 gcagtccaagagacatatttctcacttacacttgtatgtctagcttggagctcaggtgcg 308
|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| | |
Sbjct: 449 gcagtccaagagacttatttctcacttacacttgtatgtcaagcttggagctcaggcgtg 508
Query: 309 tcctggtgttgttagtattgtattcccaatgtttactataccctcttaggcacagagcag 368
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 509 tcctggtgttgttagtattgtattccaaatgtttactataccctcttaggcacagagcag 568
Query: 369 tcatctctctgcaggcttttgtggtttcgctaggcaacatagctagctcttgtcaactta 428
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tcatctctctgcaggctttcgtggtttcgctaggcaacatagctagctcttgtcaactta 628
Query: 429 ctagctgagcttgcatgtgctacactggaaattttaattattggtt 474
| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 629 caagctgagcttgcatgtgctacactggaaaatttaattattggtt 674
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space: 400896
Effective search space used: 400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no360_p21.g1 MSMg01no360_p21.g1 CHROMAT_FILE:
MSMg01no360_p21.g1 PHD_FILE: MSMg01no360_p21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:53 2005
(468 letters)
>mm_chr6_104295000_104295867
Length = 868
Score = 708 bits (366), Expect = 0.0
Identities = 415/444 (93%), Gaps = 22/444 (4%)
Strand = Plus / Minus
Query: 47 attttcataaaaattattgttactgagggtgagaactagagagagatagatgc------- 99
|||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 866 attttcataaaaattattgttactgagggtgagaactagaaagagatagatacagagaaa 807
Query: 100 -----------agagagagagagagagagagagagacagacagacagac--agacagaga 146
||||||||||||||||||||||||| ||| ||| |||| |||||||||
Sbjct: 806 gagagagagagagagagagagagagagagagagagagagagagagagacagagacagaga 747
Query: 147 c--agacagagagagacagagggacagagagagagacagggacagagacagagacagaga 204
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 cagagacagagagagacagagggacagagagagagacagggacagagacagagacagaga 687
Query: 205 caaatagagaaaaggagattaagatggtgccatactggtaccagaaccattctgtcagaa 264
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 cagatagagaaaaggagattaagatggtgccatactggtaccagaaccattctgtcagaa 627
Query: 265 gaaaaaaggagtaagtataagatttttatctcctctttagaacttaccatatttaatttt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gaaaaaaggagtaagtataagatttttatctcctctttagaacttaccatatttaatttt 567
Query: 325 taaatggcttctagtatcagaaaagcatgagaaatcaaattagattttaatactcttgag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 taaatggcttctagtatcagaaaagcatgagaaatcaaattagattttaatactcttgag 507
Query: 385 tactcattctccaattattttcctgccttttgagatttttctaagtagaagattaacagt 444
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 506 tactcattctccaattattttcccgccttttgagatttttctaagtagaagattaacagt 447
Query: 445 tttctcagtgttgggagcactaca 468
||||||||||||||||||||||||
Sbjct: 446 tttctcagtgttgggagcactaca 423
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space: 392964
Effective search space used: 392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
