Query= MSMg01no361_c03.b1 MSMg01no361_c03.b1 CHROMAT_FILE:
MSMg01no361_c03.b1 PHD_FILE: MSMg01no361_c03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:04 2005
(209 letters)
>mm_chr6_144157901_144158509
Length = 609
Score = 313 bits (162), Expect = 4e-90
Identities = 165/166 (99%)
Strand = Plus / Minus
Query: 1 aactggcgcccggaggttgtctaatgcctagcagtcagagtgtgcggctgtgcagagggg 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aactggcgcctggaggttgtctaatgcctagcagtcagagtgtgcggctgtgcagagggg 263
Query: 61 gagtagccagaccgctgctggaagtgtactacccctttaagagaatggtcaaggagtcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gagtagccagaccgctgctggaagtgtactacccctttaagagaatggtcaaggagtcct 203
Query: 121 aggagagagagagagagagagagagagagagagagagagagagaga 166
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 aggagagagagagagagagagagagagagagagagagagagagaga 157
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 79
Number of extensions: 35
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 609
Length adjustment: 9
Effective length of query: 200
Effective length of database: 600
Effective search space: 120000
Effective search space used: 120000
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no361_c03.g1 MSMg01no361_c03.g1 CHROMAT_FILE:
MSMg01no361_c03.g1 PHD_FILE: MSMg01no361_c03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:05 2005
(532 letters)
>mm_chr6_144034147_144035078
Length = 932
Score = 872 bits (451), Expect = 0.0
Identities = 511/541 (94%), Gaps = 19/541 (3%)
Strand = Plus / Plus
Query: 1 acagaaggtaggacagcgtgtacaagcatgcgggctgaagccagaccaaattctagcatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagaaggtaggacagcgtgtacaagcatgcgggctgaagccagaccaaattctagcatg 260
Query: 61 gtgaagctatggcagaaagtcgcatccctacctgagaacctcttggcaattgttagctga 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgaagctatggcagaaagttgcatccctacctgagaacctcttggcaattgttagctga 320
Query: 121 tttgaagagggtcagacaatctctaagactgcagtctctagtaagttgaccacattgtag 180
||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 tttgaagagggtcagacaatctctaagactgca--------taagttgaccacattgtag 372
Query: 181 aagactacacattcaagaacattggtccagcatgggatggtcttga-tttttttttaaag 239
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 373 aagactacacattcaagaacattggtccagcatgggctggtcttgattttttttttaaag 432
Query: 240 gacacaaaaacttgggtggatacagaaagat--------tggatatatatggtaagagct 291
||||||||||||||||||||||||||||||| | ||||||||||| ||||||
Sbjct: 433 gacacaaaaacttgggtggatacagaaagattatatatat--atatatatggttagagct 490
Query: 292 gtggcaggaggttgaatatgataaggcatatatggaattctcaaagaactaatacaactg 351
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 491 gtggcaggaggttgaatatgataaagcatatatggaattcttaaagaactaatacaactg 550
Query: 352 gtttttaaaattatcttaagataggatttcctgtagctgcagcttgcttcaaacttccta 411
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 551 gtttttaaaattatcttaagataggatttcctgcagctgcagcttgcttcaaacttccta 610
Query: 412 tataaaccttgaacacttggcccttttgctgagattacagatgtgagccacaacacctgg 471
|||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tatagactttgaacacctggcccttttgctgagattacagatgtgagccacaacacctgg 670
Query: 472 aggtgcagtgagctggagttacagatgtgtgccacaacacctggaggtacagtgagctgg 531
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 671 aggtgcagtgagctggggttacagatgtgtgccacaacacctggaggtacagtgatctgg 730
Query: 532 g 532
|
Sbjct: 731 g 731
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space: 481284
Effective search space used: 481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
