NTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATATCAATTCCAGCCTGGAACACTTCTTCATAAGTTGACTGACC
CACCTTCTGTTAAGGCTCCTCCCTCCCCCCTCCCCAACCAAGTGGCCAAC
TCCAGTTCTTAACAAACACATCAGCTGTTGTCCTTCTTGTCCCTGAGAGC
ATAGGGTAGTTGCATCTTTCTTGATTCTTTCTGTTCTGTTATCATAGTCC
CAATGTCAGGGTCTGTGTCTTTCAGACTCTTCCCTTTTATTTCTCAAGTG
ACCATTTCCCTTTCAATCAAATTTGGCTTTTAAAAAGCCAGATTTTGTCT
TGTGACAATATTGATTTCTGGTCTGTGCTTCAACAGCTAGCCTGGGAAAT
AAAAAAAACTGAATAGCTATTGATTTTTTTTTTCTCTTTGCACTGCAATT
ATACCAATCTCAACTTTCCTAAATACCAATCTTAACTTTCCTCAAGGCAA
TATGAGAAAGTATTAATTATTGGAGGAATAATCATTCAATGGAAATTGTA
GATAGTTTTAAAATTTGAGATATTTTATTAGGTAATAAGGGGAAAAAGAA
ATCGATTTACAAATAAATCTTGATTTCTTCTAAAGCTCAAGTTATTCTTA
TTTTGGTCAGCATAATGTTTTGATTTTTCTATAAATCACGGTGCTTATTT
CCCACGGAGAAGAGGCGCGGCCATATTTATTCTCACATTCTAACA

NCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATTGTAGATGTACCACATTTTCT
TTATTTGCTCTTCAGTTGAGGGTCATTTTGGTTATTTCCAGTTTCTGGCT
ATTATGAATAAAAATGCTATGAATATAGTTGAGCAAATGTCTCCACCAAC
CCTACATCTGACAAAGGGCTAATATCCAAAATGTATAAAGAACTCAAGAA
GTTAGATACCAATAACCCAATTAAGAAATGGGGTACAGAGCTGAACAGAC
TTCTCAACAGAGGGATCTCAAATAGCAGAGAAATACTTAAATACATGTTT
AAAGTCCCCAGTCTTCAGGGAAATGCAAACTAAAACAATTCTGAGATTCC
ACCCTAACACTGGTCAGAATGGCTAAGATCAAAAACACAAGTGATAGCAC
ATGTTGGTGAGGATGTGGAACAAAGACACTCCTGCATGGCTGCTGGGAGT
GCAAACTTGTACAGACACTTTAGAATTCAATTTGGCAGTTTCTCAGAAAA
CTGGGAATAGTTTTACCTCAGGACCCAGCTATACCACTCCTAGGCATATT
CACAAAAGATACTTCACCCACAAAGACACTTGTTCAACTATGTTTATGGA
AGCTGAAAATCTTAACCACTCCATGGGTTCTCAGACAAGCTAAAGTATCA
CAGTGGCTTTGTTAAGCTAGCCTAACATTTTCACCTCAGGCAGACTCCCT
GGCCTTTT

Query= MSMg01no362_b23.b1 MSMg01no362_b23.b1 CHROMAT_FILE:
MSMg01no362_b23.b1 PHD_FILE: MSMg01no362_b23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:22 2005
         (537 letters)



>mm_chr6_12165500_12166436
          Length = 937

 Score =  996 bits (515), Expect = 0.0
 Identities = 533/539 (98%), Gaps = 4/539 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcctggaacacttcttcataagttgactgacccaccttctgttaaggctcctccctcccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 gcctggaacacttcttcataagttgactgacccaccttctgttaaggctcctccctcccc 678

                                                                       
Query: 61  cctccccaaccaagtggccaactccagttcttaacaaacacatcagctgttgtccttctt 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 cctcctcaaccaagtggccaactccagttcttaacaaacacatcagctgttgtccttctt 618

                                                                       
Query: 121 gtccctgagagcatagggtagttgcatctttcttgattctttctgttctgttatcatagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gtccctgagagcatagggtagttgcatctttcttgattctttctgttctgttatcatagt 558

                                                                       
Query: 181 cccaatgtcagggtctgtgtctttcagactcttcccttttatttctcaagtgaccatttc 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 557 cccaatgtcagggtctgtgtctttcagactcttccctttgatttctcaagtgaccatttc 498

                                                                       
Query: 241 cctttcaatcaaatttggcttttaaaaagccagattttgtcttgtgacaatattgatttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 cctttcaatcaaatttggcttttaaaaagccagattttgtcttgtgacaatattgatttc 438

                                                                       
Query: 301 tggtctgtgcttcaacagctagcctgggaaa-taaaaaaaa-ctgaatagctattgattt 358
           ||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||| |||
Sbjct: 437 tggtctgtgcttcaacagctagcctgg-aaagtaaaaaaaaactgaatagctattg-ttt 380

                                                                       
Query: 359 tttttttctctttgcactgcaattataccaatctcaactttcctaaataccaatcttaac 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tttttttctctttgcactgcaattataccaatctcaactttcctaaataccaatcttaac 320

                                                                       
Query: 419 tttcctcaaggcaatatgagaaagtattaattattggaggaataatcattcaatggaaat 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tttcctcaaggcaatatgagaaagtattaattattggaggaataatcattcaatggaaat 260

                                                                      
Query: 479 tgtagatagttttaaaatttgagatattttattaggtaataaggggaaaaagaaatcga 537
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tgtagatagttttaaaatttgagatattttattaggtaataaggggaaaaagaaatcga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)