BAC Information

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BAC

Clone NameMSMg01-362L24
Chromosome6 (Build37)
Map Location 73,483,110 - 73,672,919
singlet/doubletdoublet
Overlap genenone
Upstream geneCapg, Rbed1, Retsat, Tgoln1, LOC100038890, Tcf3, Kcmf1, Tmsb10, Dnahc6, Suclg1, Olfr210-ps1, 4931417E11Rik, LOC100043338
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362L24.T7 (MSMg01no362_l24.b1)MSMg01-362L24.TJ (MSMg01no362_l24.g1)
ACCAG471361AG471362
length759771
length of high quality
(start - end)		462 (51 - 512)406 (82 - 487)
definitionCHROMAT_FILE: MSMg01no362_l24.b1 PHD_FILE: MSMg01no362_l24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:14 2005CHROMAT_FILE: MSMg01no362_l24.g1 PHD_FILE: MSMg01no362_l24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,483,110 - 73,483,568)(73,672,573 - 73,672,919)
sequence
NTTTATTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCACTTGAGTGCTTTGTCTTGCTGTTTGCAAGCTACGCCGTG
ACCCCGTCTCTGAATATGCATGCTTACTGGATTATTTTCTTTGGCTTCTG
TTAATGAGAGACGCACAGTTTTAGGAGAACACAGCGACAGGGGCTCCAGT
GACTTTTCCTGTTCCAATGTGAAAGTCTACTTTTGACGAGTGCATGATTC
ATGTACTTTAGAGCTGCCTCTAGGGGGCTGAAAGTGAGAAAAAACTTATA
TGTGGCCTATTTACCTTTCACCAGTTTGAGTTACTCCAGTCAGCATGTCA
GCTCCATCTAGGAGTCCAATCTTCAGCAATACCAGCGAAAGAAAATCACC
CCAGACAGTGGAAATGATTTGTTCCAGGCAAGAACTGGATCCTGCATGGC
CAGGTTCAGGGTCCCCCAGCTTGTTTCCTTTATCATCTGCTTTTCACCAA
AGGGGACTTAGAAAATATACAGGAAGATGTTTCAAAGCACTGAAGTCCCC
TGCAGCAAGAGCCAAGGCAGGGTCTTTCTTTCCTGGCTGAAAGTAGACAA
TAAAAAATAATAGCTTTGACGTTTGTGCTACCTTTATAGGCAGGTGGGAA
CCTATGCCTACAAAGGTTTAATAAAATAAAGAAGGTTGGGGGAGACTAAA
AGAAGGTTACAAACCATTTTTTGTTTTTTTTCCAAAATCCTTGGGGAGAT
TACGCGGGG

NNTTTCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTTTGATATTCTTAATG
ATAATTTAGTCAAACACAGAGCAAAAAATTGACACTCATGGTCTTTATCT
CATGAATAATTTTTAATAGTTTGATTTCTGATGAAGAAAAAGTATTATGT
ACCCAACAGAACTCAGTTATCTCTATAGCTTTTCTTTTGCTGTTATAAGA
CAGCAAGACCAAGGAAGCTTATAAAAGAAAGGGTTTATTTGTGGCTTACA
GTTTCAGAGGGTGAGTCCATGAGCAACAAGGGTGGGAAGTATGGCAGCAG
AAAGGTATGCATGGCATTAAAGCAGTAGCTGGGAGCTTGCATCTTGGTCC
TCAAACACTAGGCAAAGAGAGCTAATTGGTAATGACATGGTTTTTTGAGA
CCTCAAATTATCTCCCAGTGAGACACCTCTTTCATAATGGCCACACCTCC
TAATCCAACAACTAGTGACCAAGTATTCAAATATAGGAGTTAATTCAGGC
NATTTTCTTCCCACCACCACACCATATATTTGAAATATACCATCTCCTTT
TCTAGAATATAAAAAAGGGACCTTCTAGATGTGGACAATACCCACCACCT
CTCATTATAATCCCCCCGCACTCTTGGAGTTAAAAAAATTGGCGGTTTAT
TTTTGCCGCGAATAACCAAAAAATTGATTTGGCCTAAAACGGGTTATTTA
AAAAAACCCTTCCCCTTTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_l24.b1 MSMg01no362_l24.b1 CHROMAT_FILE:
MSMg01no362_l24.b1 PHD_FILE: MSMg01no362_l24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:14 2005
         (462 letters)



>mm_chr6_73482907_73483768
          Length = 862

 Score =  872 bits (451), Expect = 0.0
 Identities = 457/459 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcacttgagtgctttgtcttgctgtttgcaagctacgccgtgaccccgtctctga 63
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 204 ggaattcacttgagtgctttgtcttgctgtttgcaagctacgccatgaccccgtctctga 263

                                                                       
Query: 64  atatgcatgcttactggattattttctttggcttctgttaatgagagacgcacagtttta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atatgcatgcttactggattattttctttggcttctgttaatgagagacgcacagtttta 323

                                                                       
Query: 124 ggagaacacagcgacaggggctccagtgacttttcctgttccaatgtgaaagtctacttt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggagaacacagcgacaggggctccagtgacttttcctgttccaatgtgaaagtctacttt 383

                                                                       
Query: 184 tgacgagtgcatgattcatgtactttagagctgcctctagggggctgaaagtgagaaaaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgacgagtgcatgattcatgtactttagagctgcctctagggggctgaaagtgagaaaaa 443

                                                                       
Query: 244 acttatatgtggcctatttacctttcaccagtttgagttactccagtcagcatgtcagct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acttatatgtggcctatttacctttcaccagtttgagttactccagtcagcatgtcagct 503

                                                                       
Query: 304 ccatctaggagtccaatcttcagcaataccagcgaaagaaaatcaccccagacagtggaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ccatctaggagtccaatcttcagcaataccagcgaaagaaaatcaccccagacagtggaa 563

                                                                       
Query: 364 atgatttgttccaggcaagaactggatcctgcatggccaggttcagggtcccccagcttg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 atgatttgttccaggcaagaactggatcctgcatggccaggttcagggtcccccagcttg 623

                                                  
Query: 424 tttcctttatcatctgcttttcaccaaaggggacttaga 462
           || ||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttgcctttatcatctgcttttcaccaaaggggacttaga 662


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space:   385104
Effective search space used:   385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no362_l24.g1 MSMg01no362_l24.g1 CHROMAT_FILE:
MSMg01no362_l24.g1 PHD_FILE: MSMg01no362_l24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:14 2005
         (406 letters)



>mm_chr6_73672573_73673378
          Length = 806

 Score =  648 bits (335), Expect = 0.0
 Identities = 344/347 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttttgatattcttaatgataatttagtcaaacacagagcaaaaaattgacactcatgg 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 347 tcttttgatattcttaatgataatttagtcacacacagagcaaaaaattgacactcatgg 288

                                                                       
Query: 61  tctttatctcatgaataatttttaatagtttgatttctgatgaagaaaaagtattatgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 tctttatctcatgaataatttttaatagtttgatttctgatgaagaaaaagtattatgta 228

                                                                       
Query: 121 cccaacagaactcagttatctctatagcttttcttttgctgttataagacagcaagacca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 cccaacagaactcagttatctctatagcttttcttttgctgttataagacagcaagacca 168

                                                                       
Query: 181 aggaagcttataaaagaaagggtttatttgtggcttacagtttcagagggtgagtccatg 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 167 aggaagcttataaaagaaagggtttatttgtggcttacagtttcagagggtgagtctatg 108

                                                                       
Query: 241 agcaacaagggtgggaagtatggcagcagaaaggtatgcatggcattaaagcagtagctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 107 agcaacaagggtgggaagtatggcagcagaaaggtatgcatggcattgaagcagtagctg 48

                                                          
Query: 301 ggagcttgcatcttggtcctcaaacactaggcaaagagagctaattg 347
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47  ggagcttgcatcttggtcctcaaacactaggcaaagagagctaattg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space:   316409
Effective search space used:   316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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