BAC Information

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BAC

Clone NameMSMg01-362O11
Chromosome6 (Build37)
Map Location 96,977,102 - 96,977,506
singlet/doubletsinglet
Overlap geneC130034I18Rik
Upstream geneLOC545867, C630007B19Rik, LOC100043685, 1700123L14Rik
Downstream geneA130022J15Rik, Tmf1, Ube1c, Arl6ip5, Lmod3, Frmd4b, LOC641241, LOC100043692, Mitf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362O11.T7 (MSMg01no362_o11.b1)MSMg01-362O11.TJ (MSMg01no362_o11.g1)
ACCAG471477AG471478
length1,090789
length of high quality
(start - end)
---407 (71 - 477)
definitionCHROMAT_FILE: MSMg01no362_o11.b1 PHD_FILE: MSMg01no362_o11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:26 2005CHROMAT_FILE: MSMg01no362_o11.g1 PHD_FILE: MSMg01no362_o11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCGCGTCGCCAGAGACCCTAATTCAACATGTTGTCGCTTGAGGACAAAGG
ATCGGTTAANTTGCATCGCTGGAGAGTACTCACACACTACACCTGCGATA
TCATACTTCACGTGCCTCTCTTCCTTCTTCGCTGCGCCTTCTTTCCGACG
TGGTTTACCCGGCTGTGAGCCCTATACCTCCGCCACCTCTCGCATATACA
TATATACTCAAGCAATAGACAACCTAACTCTCATCGTTCCTGACTAAGAA
AGAAGATAAGTTCAAGATTAAACTAGCGTGATAGGAGAAAGCGTTATCCC
GTCCATTATACGCAACCCCGACACGCCCGGTTAACGAAAATCAAATATAA
GAGACAACCAGACGAGCGGAAAGGGTTAGACTGCGTCGTTTGGGAGCGCT
TGCACTACGGCAAGACTCTGAGTATAACTATTGGTTCGGGGCGGGGGCGT
GTGAGCTCCCGTAGCGCTAACGTGAGTATCAGATGTAGGGAGAGGGCGTC
TCGATTAACTGGGGCGCGTAGCGCGCGATTTAATTCCTGGACGGGGACGG
ATGTTGTGTGTACACATGACGCGGAACTGATTATATAAGTAGGATCGGCG
ACGAGATAGGACGAGGTGTCAGCCGATCGCCTTTTGCGTGGGGCGCGAGG
GTATGGGTGATAGAACAAGTAGCAACAAAGACCCAATGCACCGATTCTAT
TTCACCATGCACGAAGCACGCGTGGCTGTAGTATCCGGCCGGACAAGACG
AGTATGTGTTGCAGAAACGTCCGACCCCCCCCACTCGATGTCTGTATAAT
GTCATGACGCATACTCCCGTACGCCACACAGCTCCTATAATATATGTCCT
ATACGCGATCTGCCATATACGACAGACTTTACATAGAGAGTGGAACGTGT
CAAGGCGACTCTGTACGACAGCCGCACGCGGCACCTCGATAGTTCCAGCT
AATAGTATATGTCCTCACGTCGCGACTCGCGTAATCGCGTGTCGTGCGGC
GACTACGCGATGATAAAGTACGCAAACATATACTGCCTGGAGCGCCATCC
GATGCAGCTATCGATACGCTGCGCATTGGTGACCGCGCGN
ATGATGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTTTCTTTGTCCACAAGAGGGCTCTCCTGT
CTAACAAAAGGTAATTTTAAAGTTGAAAATGTAATGGAGGTTTAGATTAA
GCCTCTAAGAAGCATTTATCCCGGTAATGGATTAAAGTGGCCAATATTGT
CTGCAATGGGCTTTGTCTTGCTATGCTATCCAGCTATGCTGCAATTTAGT
ATGAGGGTCTGTCCAAGGATGTCTTTGAAAGGGAATCCCAGTGTACTGCC
CTTAGACGATGCTCTGTGCAATCAGTCGCTAAGACTGGAAGGCACTTGAC
TGGACTCTTAGTCAAATTCTAATTGACAGGAATCTGGAGAAGCCTGGTCA
CGTGCTGTTTATTTTTTTGTGGGAAGGGCTACCTGATTAACCAATGCATA
TTTAAAGCCTGGCATGGCAGGCTACTTGGCAGCATCCTAGAGATTGGGAT
TTGGGGGTGAGGGGCACGGACAGCATATTCTTCTGTCCTGTATTCGCCCT
TTCTATTTTTGTCACTCTCTTGCTTCTTCCCCCTGTCACGTTTCACCGCT
TCCCTATTTTTTTTTTTTTGCTCGTTTCGGACCCTTCCCTTTTTTCGTTT
TCGTATATTTTCCTGACACTGTCTTCTTTATTTTTTTTTTCTTCTTCCAC
TATTTTACTCTGTCCTTCACTTCTCTTTTGCCTTCCGCACGCCCTTCTTG
TCCGTCTCCTTGTTATTTCTTTTCTCCCTTTCCTTTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_o11.g1 MSMg01no362_o11.g1 CHROMAT_FILE:
MSMg01no362_o11.g1 PHD_FILE: MSMg01no362_o11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:26 2005
         (407 letters)



>mm_chr6_96976902_96977708
          Length = 807

 Score =  775 bits (401), Expect = 0.0
 Identities = 404/405 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttctttgtccacaagagggctctcctgtctaacaaaaggtaattttaaagttgaaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ctttctttgtccacaagagggctctcctgtctaacaaaaggtaattttaaagttgaaaat 546

                                                                       
Query: 61  gtaatggaggtttagattaagcctctaagaagcatttatcccggtaatggattaaagtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gtaatggaggtttagattaagcctctaagaagcatttatcccggtaatggattaaagtgg 486

                                                                       
Query: 121 ccaatattgtctgcaatgggctttgtcttgctatgctatccagctatgctgcaatttagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ccaatattgtctgcaatgggctttgtcttgctatgctatccagctatgctgcaatttagt 426

                                                                       
Query: 181 atgagggtctgtccaaggatgtctttgaaagggaatcccagtgtactgcccttagacgat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 atgagggtctgtccaaggatgtctttgaaagggaatcccagtgtactgcccttagacgat 366

                                                                       
Query: 241 gctctgtgcaatcagtcgctaagactggaaggcacttgactggactcttagtcaaattct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gctctgtgcaatcagtcgctaagactggaaggcacttgactggactcttagtcaaattct 306

                                                                       
Query: 301 aattgacaggaatctggagaagcctggtcacgtgctgtttatttttttgtgggaagggct 360
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 305 aattgacaggaatctggagaagcctggtcacgtgctgttcatttttttgtgggaagggct 246

                                                        
Query: 361 acctgattaaccaatgcatatttaaagcctggcatggcaggctac 405
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 acctgattaaccaatgcatatttaaagcctggcatggcaggctac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 807
Length adjustment: 9
Effective length of query: 398
Effective length of database: 798
Effective search space:   317604
Effective search space used:   317604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)