BAC Information

Click to search

BAC

Clone NameMSMg01-363O24
Chromosome6 (Build37)
Map Location 15,296,042 - 15,296,490
singlet/doubletsinglet
Overlap geneFoxp2
Upstream geneLOC667797, Ppp1r3a, LOC100040568
Downstream geneMdfic, LOC100041116
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-363O24.T7 (MSMg01no363_o24.b1)MSMg01-363O24.TJ (MSMg01no363_o24.g1)
ACCAG472254AG472255
length793755
length of high quality
(start - end)
92 (63 - 154)449 (79 - 527)
definitionCHROMAT_FILE: MSMg01no363_o24.b1 PHD_FILE: MSMg01no363_o24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:49 2005CHROMAT_FILE: MSMg01no363_o24.g1 PHD_FILE: MSMg01no363_o24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCGCGGAATTCTT
TGTTCTGTTCCGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGAAG
TCCACCTTCTTGAGCTCTTTATATATGTTGGATATTACTCCCCTATCTGA
TTTAGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTT
ACTGACTGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGCCCC
CTTTGTCAATTCTCGATCTTACAGTACAAGTTATTGCTGTTCTGTTCAGG
AATGTCTCCCCTGTGCCCATACCTTCTCGGACTTTCCCTACTTCGTCCTC
TATATGTTTCATTGTCTCTGCGCTTCCACGTGAATTTCCTTGATCCACTT
ATATTTGACCTTAGAACTTGGTCTCCTGTATGGTCCGATTTGCATTCGTC
CCTTTGACAATTCCTTCTTTGTGTCTCTCTCATTTTGCCTTACAATGTTT
GTCCTTCCCTCTATTTGTATGTCTTCCACCCTCTATCTCTCGACGGCATT
TCTTTCCCTCTTTTTGTCCCCGCTCCTCTCTTTTCTCTCGCTCTCTCTCC
TCTTATTCTTCTTCTTTCTCACTACCTTTGACCTCCCTTTCCCTGTACCC
CTTCTTTTTTTAACTTACTTTCCTTTTTCTGGTTCATTCCCTTTCTCTCC
TCTTTTCCTGTACTTTCCTTCTTTTCCCCCCCTTCACCTCTTTTTTTTTT
TGGCCTTTTCTGCCCTTTTTTCCATTCATCGTTTTCTCGTACT
NNCCCATTGCAGGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGATAGTCTAAAGGGACAGGT
TAAAAGTAGTTACAGACTATTACATTACTTGAAAGTAAATGTAGAGAAGA
AAGGCTAATCAAGAAGGAGGGTAATATTTACAGATTTAGATTAAAATAGA
TCAGTAAAGAAAATAGAATGTGATGGGTTCAATAGATTTGGGCACTGATG
GTACCCTTAGAGAGACAAGGGGGGTGAGAAGGATGAGCAGCCATTTGTAT
CTGCTTAAGAGTAGCCTTCCTACATAAAATCTCTTATATTTAGGGGAAAT
TTTATTTCTTATAGCATGCATTTCATTTAACATATATCTAAGGAACATTA
GAGGTGAACTTAGTGACCTAGATACCCTCAAATTGCCTCATAATAATGAA
CTAAAAATATACTAAAATCTGCAGTACGTATGAATAATGTTTATTTTTGT
TTCACACCAATGCAACATAGTTTCTCAGTCAAGAATTCCACCAAGAAAAT
AGAATTAATATTTAACAACTATATCCAAATGCAAAGGATATGAATTACCA
AAAACATTGATATCTTGGCCAGGGTTATTGGGAACTGTTAAATGAAGCCA
GGGTATTTAGGGTGGGGAAACACCCTCATAAAATCCGGGGTGAGGGAAGA
AGGGAATTTTNACCTTCCCTTCTTTTTTTTTTCTTGTGTTTCTTCTACTT
CTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no363_o24.g1 MSMg01no363_o24.g1 CHROMAT_FILE:
MSMg01no363_o24.g1 PHD_FILE: MSMg01no363_o24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:49 2005
         (449 letters)



>mm_chr6_15295842_15296690
          Length = 849

 Score =  837 bits (433), Expect = 0.0
 Identities = 445/449 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgatagtctaaagggacaggttaaaagtagttacagactattacattacttgaaagtaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 ttgatagtctaaagggacaggttaaaagtagttacagactattacattacttgaaagtaa 590

                                                                       
Query: 61  atgtagagaagaaaggctaatcaagaaggagggtaatatttacagatttagattaaaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 atgtagagaagaaaggctaatcaagaaggagggtaatatttacagatttagattaaaata 530

                                                                       
Query: 121 gatcagtaaagaaaatagaatgtgatgggttcaatagatttgggcactgatggtaccctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 gatcagtaaagaaaatagaatgtgatgggttcaatagatttgggcactgatggtaccctt 470

                                                                       
Query: 181 agagagacaaggggggtgagaaggatgagcagccatttgtatctgcttaagagtagcctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 agagagacaaggggggtgagaaggatgagcagccatttgtatctgcttaagagtagcctt 410

                                                                       
Query: 241 cctacataaaatctcttatatttaggggaaattttatttcttatagcatgcatttcattt 300
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 409 cctacataaaatctcttatatttaagggaaattttatttcttatagcatgcatttcattt 350

                                                                       
Query: 301 aacatatatctaaggaacattagaggtgaacttagtgacctagataccctcaaattgcct 360
           |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 349 aacatatatctaaggaacataagaggtgaacttagtgacctagatacactcaaattgcct 290

                                                                       
Query: 361 cataataatgaactaaaaatatactaaaatctgcagtacgtatgaataatgtttattttt 420
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 289 cataataatgaactaaaaatatactaaaatctgcagtacatatgaataatgtttattttt 230

                                        
Query: 421 gtttcacaccaatgcaacatagtttctca 449
           |||||||||||||||||||||||||||||
Sbjct: 229 gtttcacaccaatgcaacatagtttctca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 849
Length adjustment: 10
Effective length of query: 439
Effective length of database: 839
Effective search space:   368321
Effective search space used:   368321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)