BAC Information

Click to search

BAC

Clone NameMSMg01-364G08
Chromosome6 (Build37)
Map Location 17,721,401 - 17,721,765
singlet/doubletsinglet
Overlap geneSt7
Upstream geneTcfec, EG435881, Tes, EG232599, Cav2, Cav1, Met, Capza2
Downstream geneWnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364G08.T7 (MSMg01no364_g08.b1)MSMg01-364G08.TJ (MSMg01no364_g08.g1)
ACCAG472604AG472605
length840800
length of high quality
(start - end)		370 (48 - 417)410 (77 - 486)
definitionCHROMAT_FILE: MSMg01no364_g08.b1 PHD_FILE: MSMg01no364_g08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:29 2005CHROMAT_FILE: MSMg01no364_g08.g1 PHD_FILE: MSMg01no364_g08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCG
CGGAATTCCAACACAACTATTTACAAGTAGGACAAATAATGTTTTGAGCA
ATCATTTCAATACACACAGAAAAATCATGTTTTTGCTTCAGAATTACTGC
ATTAGGGCTGAATGTATGTGTCAAGGTAGAGCACTTGGGTAACATGTCAG
AGTGTCTGGTTCCATTCATAATACTGCCAAGAAATAAAAAGCATTGATGC
AGTAATTCATAAAGAATTAAACAGACATTCAAGAATGAGCTTTCATTGAG
TCATCAAACCCTGGCTGTAATAACTCTGGAGCACCCTGCTGATTGCTAGC
TTTCTACTTTCTCAGGGCTGGCTGGAGCAATGCGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGNNNNNNNNNNNNNNTTTTGTTTTTTTTTTTNN
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTNTTTNTTTT
TTNTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTATTTTTTTNTTTTTTT
TTTTTTTTTTTTNNTTTTTTTTTTTTTTTTNTTTTTTTGNTTTTNTTTTT
TTTTTTTTTTTTNTTTTTTTTTTTTTTTTTCCTTTTTTTTNNTTTTTCCT
TTTTTATCTTTNTTTTTTTTCTCTTCCTCCTCCTCTACTCCTTCTTCTTT
TTCCTCCCCTCTTCTTTTTCCCTCTTTCTGTCCATTATGATTCCTCTTTC
TTTTATCTATCCTATTTTCAACTCTTTATTTCCCTTCTCTCTCTACTTAT
CATCACACATATATTCCCTATCCATCTCTCCACTCTTTTN

NCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTACCTTGTTGGGCGAGCCTTAGGT
CTAGTCAAATATTGGTTGGCAGTTTGTAGGAGTTTCTGCAAAAGGTTTGT
GGCTGGGTTGGTGTTTGCGTTTCTTATTTGATAACATGCAGAGTACTATC
CTGTACAAATAATGCTAGAATGTAGGTCTGAAGGCTCTGTGCAGGCACCA
GTTCAATTTTCCCATGTTTGGTGAGTTGTATAGGCATTTTCTTCAGCGTG
GGACATTGCCATTGGTTTGTGGAGAGTATCCTATAGTCTTGGTAACAGAC
TTGATTGTTTAGGCATTCCCATGGCCAACAACTCAATTACAAGTAACCCA
ATTCCAGTATTAGAAGCTTTATTTGGTGACAACAGATGGCCAGCTGGGAC
TCTGTCTGCCCTGTCACATAAGTGGATGCTCACAGTCAGCTATTGGATGG
ATCACAGGGCCCCCAATGGAGGTATTATAGAAAGTACCCCTTGAGCTTAA
GGGATCTGCTCCCCTTTCGGTGGATCATTTTTTTGCATTACCTTTTATCC
CTGAATTCCTTGGATCTAAGCTACACTAGTTTCCTTAAAATGGTCCTTAT
CCGCGCACCCCTTGTGTTTTATCTGCACTTATTTAAACATTGTATACTCT
ATCCTGCTCTATCCACCCCACTAAACTCCCATTCGTCTAAACTATACCAT
CCTCTCGTTTTTTCTCCTCCCTTCCTTTTGCTCTCCCTTTCATCTCTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_g08.b1 MSMg01no364_g08.b1 CHROMAT_FILE:
MSMg01no364_g08.b1 PHD_FILE: MSMg01no364_g08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:29 2005
         (370 letters)



>mm_chr6_17721196_17721965
          Length = 770

 Score =  652 bits (337), Expect = 0.0
 Identities = 358/365 (98%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattccaacacaactatttacaagtaggacaaataatgttttgagcaatcatttcaata 65
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 206 gaattccaacacaactatttacaagtaggacaaataatgttttgagcaatcatttcaaca 265

                                                                       
Query: 66  cacacagaaaaatcatgtttttgcttcagaattactgcattagggctgaatgtatgtgtc 125
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 cacacagaaaagtcatgtttttgcttcagaattactgcattagggctgaatgtatgtgtc 325

                                                                       
Query: 126 aaggtagagcacttgggtaacatgtcagagtgtctggttccattcataatactgccaaga 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aaggtagagcacttgggtaacatgtcagagtgtctggttccattcataatactgccaaga 385

                                                                       
Query: 186 aataaaaagcattgatgcagtaattcataaagaattaaacagacattcaagaatgagctt 245
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aataaaaagcattgatgtagtaattcataaagaattaaacagacattcaagaatgagctt 445

                                                                       
Query: 246 tcattgagtcatcaaaccctggctgtaataactctggagcaccctgctgattgctagctt 305
           |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ttgttgagtcatcaaaccctggctgtaataactctggagcaccctgctgattgctagctt 505

                                                                       
Query: 306 tctactttctcagggctggctggagcaatgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 365
           |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 506 tctactttctcagggctgcctggagcaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 565

                
Query: 366 tgtgt 370
           |||||
Sbjct: 566 tgtgt 570


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |