BAC Information

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BAC

Clone NameMSMg01-364G14
Chromosome6 (Build37)
Map Location 121,827,446 - 121,827,805
singlet/doubletsinglet
Overlap geneMug1
Upstream geneBcl2l13, Bid, Mical3, LOC100043793, Minpp1-ps, Pex26, Tuba8, Usp18, Slc6a13, Slc6a12, Iqsec3, LOC100043486, A2m, EG640530
Downstream geneMug4, Mug2, Mug-ps1, Klrg1, LOC625931, M6pr, Phc1, 1700063H04Rik, LOC677375, 4933426K21Rik, EG667035, Mfap5, Aicda, LOC667105, Apobec1, Gdf3, Dppa3, EG667107, LOC100043805, Nanog, LOC100038891, Slc2a3, LOC100043502, D530008I22, LOC100043505, Foxj2, C3ar1, Necap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364G14.T7 (MSMg01no364_g14.b1)MSMg01-364G14.TJ (MSMg01no364_g14.g1)
ACCAG472616AG472617
length783783
length of high quality
(start - end)		450 (48 - 497)360 (78 - 437)
definitionCHROMAT_FILE: MSMg01no364_g14.b1 PHD_FILE: MSMg01no364_g14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:30 2005CHROMAT_FILE: MSMg01no364_g14.g1 PHD_FILE: MSMg01no364_g14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:30 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNNTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCGAGGATCC
GCGGAATTCCTTAATCCACTTAGATTTGACCTTAGTACAAGGAGATAGGA
ATAGATCAATTCGCATTCTTCTACATGATAACCACCAGTTATGCCAGCAC
CATTTTTTGAAAATGCTGTCTTTGTTCCACTGAATGGTTTTAGCTCCCTT
GTCAAAGATCAAGTGGCGATAGGTGTGTGGGTTCATTTCTGGGTCTTCAA
TTCTATTCCATTGGTCTACTTGTCTGTCGTTATACCAATACCATGCAGTT
TTTTATCACAATTGCTGTGTAGTACATCTTTAGGTCAGGCATGGTGATTC
CACCAGAGGTTCTTTTATCCTTGAGAAGAGTTTTCGCTATGACAAAGATG
TTACCCAGTCTCCTCCAAAATGAGTGATTCAGTGCATCACTGTTATAGTG
TTAACAGTCAAGAAGAAACTGANAATTCTGCTACATGTACACTACACCAC
TATNGTTCCATTGAAATCTCTTACTATGTTCATTTCCTCCAATTGAAACT
TCAAAAGGCCTCGCTGGAAAATTTAAACTTTGCTTTAAAAGGAAAATTCT
TGGAAATTGTCAAAGGATCCTTTAAAAAACCCCCTCTGTAAACCACCCCC
GAAAACTCCCCCCCTAATATCCTTCGGCGGTACTTTACAAAAAATTTTCC
GAAACCGGGTCGTGGTAATTCCATCGAACAAAGCTATTCCTCCTTAACCA
CAAGTTTTCCGTGCCTGTAAGACATGACTAAAA

NNCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGTGGAGTATAAGAAAGCAAATG
GAGCAAGGGCCAAGCAAGCTAGGAAGCTGCACCCCTCCACAGCTTCTGCT
TCAGTTCCTGATTCCAGATTCCTGCCCTGCCTTTGCGTCATGATAGACTG
TGAGCATGTAAGATGGTCAGCTCTCTAAGTTGCTTTAGTCACGGTGTTTT
ATCTCAAGGATGGAAATCTAGAACCAAGCAATGTGTGTGTAAACATCCAG
TGTGTCCGGATAAGTGAATGGAGAAATCCTGAGCGACCTTTTGCTCTTCC
TGGTCCCTGAGCTGCTTGGGAAGCTCTCTGATCCCATGTAGCTGTCCCGG
GTGGCTTTCCTATGGCAGGGATGGTGGGTGGATTGCCTTGNNNTCNNTAN
CTATGAAGNGAAGCAGAGCTGACCGGTGAAAAGAATACAGCTCTTGTTAT
CCATTCTTTGGTTTTTAATAAAATATCTTCTAGGACCCCTTTCCCGTTCT
TTTTTTTCTGGAAAATATTAAAAAAATTTTGGTATTATATGGTGAATTTC
CTTCCCCTGTGCGGTCTGACGTTTTTTTTTAACTTCACTTGTGTATATTC
TGAAAACGCTTATATTTTTTGATTTCTCGCCCATTCCTCCCTATTCATTA
CGTCTTTTTTTCNTGCTTACTNTCTANTCCTATNATTCTTTTTAATTAAT
TATGACCTCCTCCATTAACACTCTCTATACACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_g14.g1 MSMg01no364_g14.g1 CHROMAT_FILE:
MSMg01no364_g14.g1 PHD_FILE: MSMg01no364_g14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:30 2005
         (360 letters)



>mm_chr6_121827055_121827814
          Length = 760

 Score =  551 bits (285), Expect = e-161
 Identities = 342/361 (94%), Gaps = 2/361 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtggagtataagaaagcaaatggagcaagggccaagcaag-ctaggaagctgcacccct 59
           ||||||||||||||||||||| |||| ||||| | |||||| | ||||||||||||||||
Sbjct: 751 tgtggagtataagaaagcaaacggagtaagggtcgagcaagac-aggaagctgcacccct 693

                                                                       
Query: 60  ccacagcttctgcttcagttcctgattccagattcctgccctgcctttgcgtcatgatag 119
           |||||||||||||||||||||||| |||  ||||||||||||||||| || |||||||||
Sbjct: 692 ccacagcttctgcttcagttcctgtttctggattcctgccctgccttcgcctcatgatag 633

                                                                       
Query: 120 actgtgagcatgtaagatggtcagctctctaagttgctttagtcacggtgttttatctca 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 actgtgagcatgtaagatggtcagctctctaagttgctttagtcacggtgttttatctca 573

                                                                       
Query: 180 aggatggaaatctagaaccaagcaatgtgtgtgtaaacatccagtgtgtccggataagtg 239
           |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 572 aggatggaaatctagaaccaagcaatgtatgcgtaaacatccagtgtgtccggataagtg 513

                                                                       
Query: 240 aatggagaaatcctgagcgaccttttgctcttcctggtccctgagctgcttgggaagctc 299
           ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct: 512 aatggagaaatcctgagcgaccttttgctcttcctggtccctgagttgcttgggaaactc 453

                                                                       
Query: 300 tctgatcccatgtagctgtcccgggtggctttcctatggcagggatggtgggtggattgc 359
           |||||||||||| |||||| |||||| ||||||||||||||||||||||| |||||||||
Sbjct: 452 tctgatcccatgcagctgttccgggttgctttcctatggcagggatggtgagtggattgc 393

            
Query: 360 c 360
           |
Sbjct: 392 c 392


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 760
Length adjustment: 9
Effective length of query: 351
Effective length of database: 751
Effective search space:   263601
Effective search space used:   263601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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