BAC Information

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BAC

Clone NameMSMg01-364K14
Chromosome6 (Build37)
Map Location 48,163,467 - 48,163,622
singlet/doubletsinglet
Overlap genenone
Upstream geneCntnap2, A930035D04Rik, Cul1, Ezh2, Rn4.5s, EG384379, Pdia4, LOC100041154, Zfp786, Zfp398, Zfp282, Zfp212, A230106D06Rik, AI894139, LOC623601, Zfp777, Zfp746
Downstream geneLOC665990, Krba1, Zfp467, Sspo, EG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305, Repin1, Zfp775, AI854703, Gimap8, LOC100040560, Gimap9, Gimap4, Gimap6, Gimap7, LOC100041450, Gimap1, Gimap5, Gimap3, Tmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik, LOC100040589, Doxl2, Svs1, Gpnmb, LOC666011, Igf2bp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364K14.T7 (MSMg01no364_k14.b1)MSMg01-364K14.TJ (MSMg01no364_k14.g1)
ACCAG472804AG472805
length786789
length of high quality
(start - end)
---156 (137 - 292)
definitionCHROMAT_FILE: MSMg01no364_k14.b1 PHD_FILE: MSMg01no364_k14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:51 2005CHROMAT_FILE: MSMg01no364_k14.g1 PHD_FILE: MSMg01no364_k14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACGACAATCTTGAGGGACATGAAGTGAGTAAATCTAGGGTG
GTCAGCTGTGGCATAGTGCCAAGTATCTCCCCAGGGCAGAAGCAGATGGA
GTGACATTTATGCATCCCAGACTGGCCTACGTCTTACGTGTGTCATGAGC
TAGATGGTGCCCTCCTCCCCGTTTATGTTCAATTCTAAGAGGCACAGTCC
AGCTGCTGCCCACTAACCTGCGTGTATCTGATGAATGTGATATACGCTTG
CCAACACCAACTTGTAGAATACTGAACACATGTTTTTTTCTGACTTTTTA
AAAATCTTAACTGTCTGGTTCTTGAATGGAAACTTTCTGGATGACAACAC
TGTCCTGATGTGAAAAGGCTGACCCTGCACACTACGGGAAAGCGTCCCCT
ACCCCCAGCACTTCTGAATGTGATGTTCTCTAGGCTTTACATTAATCTCA
CATGAGAATGCATGCCTTTTACAACAGCCTGGGGCCTGTTCTCCAGCGCA
CTTGAAATCAAACACTCCCTGGAGAAGCCATGGGAGCATGCAAAAAGCCC
CCCCTAAAATAAAATGTTCCCCCTTGAAACCAACCTGGTTGGCCCCAAAT
TTTGGGACCTTTTTTATGGTTCCCCGACTGGCTACTTCTGTGCCCCTTTT
TTTCCTTTTCTGATATAGAAAATTGTATATTTTTCCCTCAAGAGCTTGTG
GTTCTTTGTTCCCTGTTGAATAACATATCCCAGTTT
NNCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAATCTGCAAAATTAAGAAACCAC
TGACACATCACAATGAATATTGGCCTCAGCTTCTAACCCTCTGGTGTTGC
TGGACCTCTGTCACTTCCAGGATGATTCTTACCTCTCTGAGTGATTTACC
CAGTATTCCTAGGCCTACTCAAGAGCATGGCATTGGCCAAGATTAAGGTG
ATACCTTTTGCTGGGTGATGGTGGTACGTACCTTTAATCCAAGCACTTGG
CAGGCAGAGGTAGATAGAGCTCTGAGTTTGATGCTAGCCTGGTCTATAAA
GGGAGTTCTAGGACAGCCAGCACCATACAGAGAAACCATGTCTCAACATA
CTAACAAACGAACTCTCAAACGAACAAACCTGCATGCCTGCAAACAAGCT
AACGAAAAATGATAATAGCTTTTGTGCCAGATAAGCGTGTGAGACCATGG
ACAGGATATAGCGCTATATATCTTACACATGGGTGCTGTGGAGGCACATT
TTGGATGTGAGCCCTATTTCATCCAGTGGACTTATAGAAAAACTCCTCCC
CCTCCTTATGTAAATAAACTTCTAGGCCCTTTTTACCCAGTAGGAAATAT
TCTTTCTCTTGGTTAAAAAGAATTTGCCTTCAAATTCACTGTAATACCCC
TTCTGTGAGTCCCTCCCCTCCCTCTTTCTTCCTCTGCGATATTTAAACAT
TTAATTTTTGTAACACCGCTTACAATTTTTTCTTCCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_k14.g1 MSMg01no364_k14.g1 CHROMAT_FILE:
MSMg01no364_k14.g1 PHD_FILE: MSMg01no364_k14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:51 2005
         (156 letters)



>mm_chr6_48163267_48163822
          Length = 556

 Score =  294 bits (152), Expect = 2e-84
 Identities = 155/156 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccctctggtgttgctggacctctgtcacttccaggatgattcttacctctctgagtgatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 ccctctggtgttgctggacctctgtcacttccaggatgattcttacctctctgtgtgatt 260

                                                                       
Query: 61  tacccagtattcctaggcctactcaagagcatggcattggccaagattaaggtgatacct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacccagtattcctaggcctactcaagagcatggcattggccaagattaaggtgatacct 320

                                               
Query: 121 tttgctgggtgatggtggtacgtacctttaatccaa 156
           ||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgctgggtgatggtggtacgtacctttaatccaa 356


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 156
Length of database: 556
Length adjustment: 8
Effective length of query: 148
Effective length of database: 548
Effective search space:    81104
Effective search space used:    81104
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)