BAC Information

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BAC

Clone NameMSMg01-364N11
Chromosome6 (Build37)
Map Location 145,420,937 - 145,421,183
singlet/doubletsinglet
Overlap genenone
Upstream gene4933425H06Rik, EG665149, Bcat1, Lrmp, Casc1, Lyrm5, Kras, LOC100039495, LOC100042866, LOC546917, 1700073E17Rik, Ifltd1
Downstream geneLOC100042879, Tuba3b, Rassf8, Bhlhb3, Sspn, Itpr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364N11.T7 (MSMg01no364_n11.b1)MSMg01-364N11.TJ (MSMg01no364_n11.g1)
ACCAG472940AG472941
length787797
length of high quality
(start - end)
246 (79 - 324)247 (76 - 322)
definitionCHROMAT_FILE: MSMg01no364_n11.b1 PHD_FILE: MSMg01no364_n11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:06 2005CHROMAT_FILE: MSMg01no364_n11.g1 PHD_FILE: MSMg01no364_n11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAATCATCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATCAAGAGAAT
GCGCGGAATTCTTTGGTTTTCCATGAGCCCCATTTTTTAATGGGGTTATT
TGATTTTCTGAAGTCCACCTTCTTGAGCTCTTTATATATGTTGGATATTA
GTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGT
GGTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAG
TTTCATTATTTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTG
CTGTTCTGTTCAGGAATTTTTCCTTTGTGCCTTTATCTTCAAGGCTTTTC
CCCACTTTCTCCTCTATAAGTTTCAGCGTCTCTGGTTTTATGTGAAGTTC
CTTGATCCACTTAGATTTCCCCCCCCCCCACGGATATAAGTATGGACCGA
TTCGCATTCTTTCATTCGATATCCTCCCAGTTGCTGTCCTTCCCCATTGT
TGGTAATGCCTGTTTTTCCTTTTCCTGGATGTTTTTAACCTCCCCTTGTC
ATCCATTTTTTTTTTTTTTCTGTTTCTGGCTTTTTTCCTGTTCCCTTTAA
TTCTTTTTTTTCTTCCTTCCCTTTTTCCCCTTTCCCTCTGCCTCTTTCTT
CTTCTTTTACCTTCAATCTTTTTTTTTTCTTTTTTCCACTCTTCTCTCTT
TTCGCCTTCCCCTTCTATTTTCCCTTTTCCTATTTCTTCTCTCTCTTTTT
TTTCTCCCCCTGTTTCTTTGTTTTTCTCTTTTTATTG
NCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTTCCAACAAAACTCAAGGGCATT
TCCTTTAGGACAAGGTAAGGGATAAACAAAAGTAGTTTTCCAATGGAGGC
CCACACTGCTTGCCATGTGGTCTTTCAATGACTAAATTCAATGGAGTGTT
TGTTTCCTGGGTCTGATATACGGAAGCAGTCTAAACTAGAGCCAGAGGTG
GCTTGCTGGTTAAGAACACTACCTGCTCTTCCAGAGGATCTGAGTTCAGT
TCTCCACCCACCCACATCGGGCATTTCTTATCAGTCTCTAACTCCAGCTC
CAGAGCAATTGGACACCTCTGGCCCCTGAGGGCACCTGTGCTCATACCTG
AATGCAGCAGATATAACACACCCCCTGTATGGAGTATCCTCCCTTGTGTC
TGATACAGGGCTTTTCCATATATGGAGCCTTTCTGGNCCCCCACTAGGCT
GTACTTCTATAGAAACTGCTTTCTGTAGTCTTTACGGTCCCAACATCCTG
AAAACCCACAACTCCTTATTCCCGGAAATTTCTAAAAAAAGGTTGAAAGC
CACAGTTGTTTAAGGGGTAATGGCCTTCCCTATGGAAAAAATATAGGTGG
CTGGTGATAAAAATTTTGTTTGGTATATATAGGGCTCTTCCCTTCTCCAA
CTTTTTTTTTTTACAAGAACTACTTCTTAGGGGGTGGTATCTTCCCTTCA
AATGTGCTCCCCACCCATTATCCATTTGTTTGATCAGCCTACTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_n11.g1 MSMg01no364_n11.g1 CHROMAT_FILE:
MSMg01no364_n11.g1 PHD_FILE: MSMg01no364_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:06 2005
         (247 letters)



>mm_chr6_145420737_145421383
          Length = 647

 Score =  462 bits (239), Expect = e-135
 Identities = 245/247 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttccaacaaaactcaagggcatttcctttaggacaaggtaagggataaacaaaagtag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttccaacaaaactcaagggcatttcctttaggacaaggtaagggataaacaaaagtag 260

                                                                       
Query: 61  ttttccaatggaggcccacactgcttgccatgtggtctttcaatgactaaattcaatgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttccaatggaggcccacactgcttgccatgtggtctttcaatgactaaattcaatgga 320

                                                                       
Query: 121 gtgtttgtttcctgggtctgatatacggaagcagtctaaactagagccagaggtggcttg 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgtttgtttcctgggtctgatgtacggaagcagtctaaactagagccagaggtggcttg 380

                                                                       
Query: 181 ctggttaagaacactacctgctcttccagaggatctgagttcagttctccacccacccac 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctggttaacaacactacctgctcttccagaggatctgagttcagttctccacccacccac 440

                  
Query: 241 atcgggc 247
           |||||||
Sbjct: 441 atcgggc 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)