XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGGC
TTGTCTGGACAACATGAGGCACTGTCTCATTAAAACAAAACACATTTTTC
TTTATACTCACAAATAAATGGTAGTCCTCACAACTCTTCAAAGAATCTTC
TCTTTGTGCCAGGCAGAGACCATTATTTTAAAAAAAGCATAACCAATCAA
AATGCAGAGTTGTGGATCTCGGTCCAGCTACAAAACAACTCTTGTGCCTA
AGGCTCGGGGATCATCTTAGAAGAAGATGCAGAAAGCTTGTAAGAGCCAG
AGGATCAGGGAGAGTGAGATTGTTTCTCCTCGTAATGTCAGATGTTACAC
CCATAATGTCTTACCAACATGACTGTTAAGAATGAGCTGAACAAGGACGT
TGTCTGTTTTAACAATAGACAGGCTAAATCAGACTGTGGGACACCTACAA
AGAATTATAGGCAACTAAGAAATGCTCAGAGAGCAAAAAATAATCTTCCC
CTAGGAAGACCGTTCTAATTGGGTATTCAATACCCAAAAGTTCGCCCCGA
ATATACCCCTATGAGTTATAACCTACGCATGGGCAGGCTACACTCCCGAC
AATGTATGGATTACCCTATGTTTTTAATATTACATGCTTCAAAATAAAAC
CCCTTTTTTTATTTAAAAGTTTCTTTCCATTGCACCTTCCTTTTTTCTCT
TCCTTTTTTCTCTCTCCCCCTTTTTTTCTTCCCTCTTTTTCTTTTTCCCC
TTTCACTCCTTTCCTCCCTTTCTCTTCCTTCTCCCCTTTTTCCG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTCAGACATATCACACACACACACACACACACACACACACAC
ACACACACACACACACGAAATACAGTTCTACAAAGAAAACAAGAAAATCA
AAACTCCTTTCCTCAGTATTAAAATACTTTGGTTTCACTTCAAAATTTTT
ACAAAATTCAATAAGAATCAACAATGAAGTGTCAATTACACCCTAACATA
CAATGTTACAAGTATTAGAGTGTACTTTTAAAAATCCAGACACAGAAGGT
CACATTCAAATGCAGTATCTAAAACACACAAAGCCAGAGAAAAGACTAGA
AGTAGCCAGGGACTGGGGAAGGGGCACAAGGTTTCCTTCTGAGTGACAAG
AACACTTTGGAAGGGCAAAGGTAACAGCAACACAAAATGTAATAAGAGCT
AATGAGACACATGCTACAAACTGGTTAATTTTATTAGGATTTTGCCTCAA
TTTTAAAAGAAAAATATTGCAAAAGGCTGGGTTTGTGGCTCAGCTGCAGA
GTTCTTTTTTTACCAGGGCCATGCTGGCTAGTTTTATGTCACCTCAACAC
AAGCTAAATCCTTTGGGGAAGAGGGGAATTCATTTGAGAAGACACACCCT
TAAACTTGGTCCAATGGGAAGCTGTTTGGGCATGAAATTAATTGGGCGTT
GTAAAGGGAAGGCCCTCCCCGGGAGAGCGCCTTGTGTGAAGAGGGGGCTA
TTAAAAAGCCGCGTTGGAACATCN

Query= MSMg01no365_h24.g1 MSMg01no365_h24.g1 CHROMAT_FILE:
MSMg01no365_h24.g1 PHD_FILE: MSMg01no365_h24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:01 2005
         (448 letters)



>mm_chr6_53623937_53624785
          Length = 849

 Score =  768 bits (397), Expect = 0.0
 Identities = 434/449 (96%), Gaps = 7/449 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagacatatcacacacacacacacacacacacacacacacacacacacacacacacgaa 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||     | |||
Sbjct: 550 tcagacatatctcacacacacacacacacacacacacacacacacacaca-----a-gaa 497

                                                                       
Query: 61  atacagttctacaaagaaaa-caagaaaatcaaaactcctttcctcagtattaaaatact 119
           ||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 496 atacaattctacaaaaaaaaccaagaaaatcaaaactcctttcctcagtattaaaatact 437

                                                                       
Query: 120 ttggtttcacttcaaaatttttacaaaattcaataagaatcaacaatgaagtgtcaatta 179
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 436 ttggtttcacttcaaaatttttacaaaattcaataagaatcaacaatggagtgtcaatta 377

                                                                       
Query: 180 caccctaacatacaatgttacaagtattagagtgtacttttaaaaatccagacacagaag 239
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 caccctaacatacaatgtcacaagtattagagtgtacttttaaaaatccagacacagaag 317

                                                                       
Query: 240 gtcacattcaaatgcagtatctaaaacacacaaagccagagaaaagactagaagtagcca 299
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gtcacaatcaaatgcagtatctaaaacacacaaagccagagaaaagactagaagtagcca 257

                                                                       
Query: 300 gggactggggaaggggcacaaggtttccttctgagtgacaagaacactttggaagggcaa 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gggactggggaaggggcacaaggtttccttctgagtgacaagaacactttggaagggcaa 197

                                                                       
Query: 360 aggtaacagcaacacaaaatgtaataagagctaatgagacacatgctacaaactggttaa 419
           |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 196 aggtaacagcaacacaaaatgtaataagagctaatgagacacatgctatagactggttaa 137

                                        
Query: 420 ttttattaggattttgcctcaattttaaa 448
           |||||||||||||||||||||||||||||
Sbjct: 136 ttttattaggattttgcctcaattttaaa 108


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 17
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 849
Length adjustment: 10
Effective length of query: 438
Effective length of database: 839
Effective search space:   367482
Effective search space used:   367482
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)