Query= MSMg01no365_l14.b1 MSMg01no365_l14.b1 CHROMAT_FILE:
MSMg01no365_l14.b1 PHD_FILE: MSMg01no365_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:18 2005
(439 letters)
>mm_chr6_87962623_87963461
Length = 839
Score = 779 bits (403), Expect = 0.0
Identities = 430/439 (97%)
Strand = Plus / Plus
Query: 1 agaggcagcagcactgagagcctgacgctagactgggctgcacagtgagttcaagggtat 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 201 agaggcagcagcactgagagcctgaggctagactgggctgcacagtgagttcaagggcat 260
Query: 61 tgagccacagtttttgtttcaaaactaaagcccaagcaaaacaacaaaacagggcctgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgagccacagtttttgtttcaaaactaaagcccaagcaaaacaacaaaacagggcctgtt 320
Query: 121 tgatggctaaagcaaaaggcacctattgccaagcctgaaaacttaattcaatcccaggac 180
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 tgatggctaaagcgaaaggcacctattgccaagcctgaaaacttaattcaatcccagggc 380
Query: 181 ccccagagcaggaggaaaaacaattcttgcacggaccttcacacccacacgcatatgcac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccccagagcaggaggaaaaacaattcttgcacggaccttcacacccacacgcatatgcac 440
Query: 241 atacataatattatattaagaatgtccctcccaaggaattttttcaccaagaaaactcac 300
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atacataataaaacattaagaatgtccctcccaaggaattttttcaccaagaaaactcac 500
Query: 301 caaccaagtgttcagtaagataagggtagggtcagggtaatgcaacctaaagagagcgcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 501 caaccaagtgttcagtaagataagggtagggtcagggtaatgcaacctaaagaaagcgcc 560
Query: 361 aatgctttccttgttcaaggctttccacaaagagtgcacatacacacagcctaagacagt 420
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 561 aatgctttccttgttcaaggctttccacaaagagtgcacatacatacagcctaagacagt 620
Query: 421 agtgcttgccttgccaggg 439
|||||||||||||||||||
Sbjct: 621 agtgcttgccttgccaggg 639
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space: 356900
Effective search space used: 356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no365_l14.g1 MSMg01no365_l14.g1 CHROMAT_FILE:
MSMg01no365_l14.g1 PHD_FILE: MSMg01no365_l14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:18 2005
(238 letters)
>mm_chr6_88136345_88136982
Length = 638
Score = 414 bits (214), Expect = e-120
Identities = 227/234 (97%), Gaps = 5/234 (2%)
Strand = Plus / Minus
Query: 5 tcctggtcagacaaaacctagagctgcaggtgccatctttgtgccacacaaaacctgctg 64
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 326 tcctggtcagacaaaacctagagctgctggtgccatcttcgtgccacacaaaacctgctg 267
Query: 65 agagcagaaatcactggggctcagagctgagagagacagagagaatcctactgtgctatc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 agagcagaaatcactggggctcagagctgagagagacagagagaatcctactgtgctatc 207
Query: 125 tattttgtttgttttgttttgttttgttttgttttgttttgttttgagacagggtctctc 184
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 tattttg-----tttgttttgttttgttttgttttgttttgttttgagacagggtctctc 152
Query: 185 tgtatagccctggttatcctggaaatcactctgaagaccaagctggtctcaaac 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 tgtatagccctggttatcctggaaatcactctgaagaccaagctggtctcaaac 98
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space: 144041
Effective search space used: 144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
