Query= MSMg01no366_f18.b1 MSMg01no366_f18.b1 CHROMAT_FILE:
MSMg01no366_f18.b1 PHD_FILE: MSMg01no366_f18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:11 2005
(420 letters)
>mm_chr6_115124073_115124892
Length = 820
Score = 719 bits (372), Expect = 0.0
Identities = 396/404 (98%)
Strand = Plus / Minus
Query: 17 ttgacccatcctccaaaattaaagtccattgcaaaaaaagataaatctatgctctaaaaa 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttgacccatcctccaaaattaaagtccattgcaaaaaaagataaatctatgctctaaaaa 561
Query: 77 tcaaaagtcagaatgacaaattcaaactaagactggaagcgcatacctaaacttatctct 136
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 560 tcaaaagtcagaatgacaaattcaaactaagactggaagcgcatacctaaacctatctct 501
Query: 137 gtggatgagagtacagtgctcttattagcaaggcatacttacatgctcatccttggagtc 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gtggatgagagtacagtgctcttattagcaaggcatacttacatgctcatccttggagtc 441
Query: 197 agagataaaacgtgctgcccaaagcctgagtactggggaggaagtactccccagaatatt 256
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 440 agagataaaacgtgctgtccaaagcctgagtactggggaggaagtactccccagaaaaac 381
Query: 257 ctgtattccctagtataaaggggaaatgacactcagacataaaaataacaaatgttctct 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctgtattccctagtataaaggggaaatgacactcagacataaaaataacaaatgttctct 321
Query: 317 agaagtataacttaacaagtcggatctgggcgagagttcacattcagactcccaattcag 376
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 320 agaagtataacttaacaagtcggatctgggccagagttcacattcagactcccaattcag 261
Query: 377 gggtatttcttagagagcagattattacagaggactgcaaccaa 420
||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 260 gggtatttcttagagagcatattattacagaggactgaaaccaa 217
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space: 333321
Effective search space used: 333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no366_f18.g1 MSMg01no366_f18.g1 CHROMAT_FILE:
MSMg01no366_f18.g1 PHD_FILE: MSMg01no366_f18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:11 2005
(388 letters)
>mm_chr6_114918341_114919134
Length = 794
Score = 712 bits (368), Expect = 0.0
Identities = 385/394 (97%), Gaps = 6/394 (1%)
Strand = Plus / Plus
Query: 1 aagactcttgagcaaagcgaaacagaaccccctaaaaaaaaggcaaagaccgaagctttc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 aagactcttgagcaaagcgaaacagaaccccctaaaaaaaaggcaaagaccggagctttc 260
Query: 61 cagggaggcctcatacagtgtaggaagatcgcgcagccctattttgagcaggggcaggga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagggaggcctcatacagtgtaggaagatcgcgcagccctattttgagcaggggcaggga 320
Query: 121 atgtacggaaagggccgggt------gccctcgcgcagcccagaagctccgcggccggga 174
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 atgtacggaaagggccgggtcccgcagccctcgcgcagcccagaagctccgcggccggga 380
Query: 175 cccagcggatgccttgcttcagggcctgtgctcgcgcccgggaccggggtcagctggagc 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccagcggatgccttgcttcagggcctgtgctcgcgcccgggaccggggtcagctggagc 440
Query: 235 tggaccgtcccgagagcacgagcaggcgccctccgtccgcgtcggttccctgtctcctaa 294
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 441 tggaccgtcccgagagcacgagcaggcgccctcggtccgcgtcggttccctgtctcctaa 500
Query: 295 agtcaccgaacctggactaggatttcccggcactcaccgcttgagcgcctcgggccggcc 354
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtcaccgaacatggactaggatttcccggcactcaccgcttgagcgcctcgggccggcc 560
Query: 355 gggccccgccgggggcgcaaaggacggaggcgga 388
||||||||||||||||||||||||||||||||||
Sbjct: 561 gggccccgccgggggcgcaaaggacggaggcgga 594
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 794
Length adjustment: 9
Effective length of query: 379
Effective length of database: 785
Effective search space: 297515
Effective search space used: 297515
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
