BAC Information

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BAC

Clone NameMSMg01-366H21
Chromosome6 (Build37)
Map Location 44,020,156 - 44,206,911
singlet/doubletdoublet
Overlap genenone
Upstream geneEG622841, Igk-V, Olfr443-ps1, GA_x5J8B7W6337-1183223-1183810, Olfr441, Olfr440-ps1, GA_x5J8B7W6337-1221999-1222591, Olfr438, Olfr437, Olfr13, GA_x5J8B7W6337-1270568-1271367, Olfr435, Olfr434, LOC665745, Olfr47, Arhgef5, Nobox, Tpk1, LOC665747, LOC546897, LOC665779
Downstream geneLOC100040210, Cntnap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-366H21.T7 (MSMg01no366_h21.b1)MSMg01-366H21.TJ (MSMg01no366_h21.g1)
ACCAG474192AG474193
length772774
length of high quality
(start - end)		506 (48 - 553)493 (76 - 568)
definitionCHROMAT_FILE: MSMg01no366_h21.b1 PHD_FILE: MSMg01no366_h21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:21 2005CHROMAT_FILE: MSMg01no366_h21.g1 PHD_FILE: MSMg01no366_h21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,206,412 - 44,206,911)(44,020,156 - 44,020,646)
sequence
NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTGTTCTTCTCTGTGCCCCATTTTTAATGGGGTTATTTCAAC
AACTGGTTTTGAGATATTTACAGCACTTGTACTTTGGTCCATATAAGTTT
AATGTCTTTTTGGACTTAACTTTGACAAAGAATTTATCTAAATAGTTCTA
GTCCTTGAGATTCATCTAGGATTCTTTAAATTTGGTTTCCAAAGTATTTC
CTTTAAATTGTTTTTCATTTTCTAGAGAATTATGTTAGAACTTTTTCACT
GATTGGTCAGGATTTATGGAAAGTTTTATATCCTTTATGTCATATGCTAA
AGGTTTTCACTGTGTCTAGATTAATAGCCAATCTTTCTCAAGCATATATC
TTTCTAAAAATAGAGAAGGCATGCAAAGAAGCATAGTTTAATTTTTATTG
ACAGGAACTAAGTCATAATATCAAGAACCAAAATCAATAAATATATGAAA
TATCAGGATAATTTATTATTCCTAAGCATAGTGAAACCTTATACTTTATG
TNCATCATGTATCAGATGAGAGAAAGGTCTCCCATGCTCATGGATCAGTA
GGATATTACAATATAAGTGGCCATCTTATCAAAAGCAATCTACCCTTTCA
TGGAATACCCATTGAAATTCCAAAAAATTCTTCTTTAAAGTGAAAGGAAA
ATTTCGCTTTTTAATGGAAAAAAAAANACNNTACCCCCTTCCCCCTTTCT
TATACAAAAAGCTAAAAAACCC

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTATGTTTGGGTTCATTTGCATGA
TGTTATAGGAGCTCCAAAAATAATTTATGGAAATAGAAATCATAGAAGCC
GTTTCATCTGTTGAAGGAATCAAATAGAAATGGACCAAAAAAAAAAAAAA
CCCATCTTCTTGTAATGGAAATATCCCATCTTTTGACTGGTGTCATGGTT
ATATGAGCATACAAATTCATCAGAACTCACTAAATCACACTCAATATTTG
TGCTTTACTGTGCATGTAAATATTTCTTAATAAAAAATATGCTTAAAAGA
AGATATTGGGGAAGTTCTGCCCATCAAAGCTACAACTTACTGTGAACTAC
AGATACTTAAATCTTGCACAGAACATTGATTTTCAAGTTATGGTATTCTA
GATTTGTTATTTTCTCTACAAATGTTCATATGCCTCATTCCTTCACTATG
GGTTGCTTTCATTTATGGTTAAGTAATCCTTTCAAAATCTCAAAACAGTC
TCTCTTTTCTCTCAACAATAGAAATTTTCTTCATTTTATTATTCTCATAT
TCATTCAAAAATTTACTAAGTGCCTTGTTTATAAAAAATACTTTATATTT
GTCAAGTTTTTAAAGTTGGGAAAAAGATGTCATGCCATAAATTTTAAAAT
TTTTTCAGCCCTTACTACCATGAAACTTATAAGGTTCCGACTTTAATTAA
AGGAGGACAATTGTTGAATGAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no366_h21.b1 MSMg01no366_h21.b1 CHROMAT_FILE:
MSMg01no366_h21.b1 PHD_FILE: MSMg01no366_h21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:21 2005
         (506 letters)



>mm_chr6_44206163_44207068
          Length = 906

 Score =  928 bits (480), Expect = 0.0
 Identities = 495/500 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttgttcttctctgtgccccatttttaatggggttatttcaacaactggttttg 64
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 gaattctttgttcagctctgtgccccatttttaatggggttatttcaacaactggttttg 690

                                                                       
Query: 65  agatatttacagcacttgtactttggtccatataagtttaatgtctttttggacttaact 124
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 689 agatatttacagcacttgtactttggtccatacaagtttaatgtctttttggacttaact 630

                                                                       
Query: 125 ttgacaaagaatttatctaaatagttctagtccttgagattcatctaggattctttaaat 184
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 629 ttgacaaagaatttatctaaatagttctagtcattgagattcatctaggattctttaaat 570

                                                                       
Query: 185 ttggtttccaaagtatttcctttaaattgtttttcattttctagagaattatgttagaac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 ttggtttccaaagtatttcctttaaattgtttttcattttctagagaattatgttagaac 510

                                                                       
Query: 245 tttttcactgattggtcaggatttatggaaagttttatatcctttatgtcatatgctaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tttttcactgattggtcaggatttatggaaagttttatatcctttatgtcatatgctaaa 450

                                                                       
Query: 305 ggttttcactgtgtctagattaatagccaatctttctcaagcatatatctttctaaaaat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ggttttcactgtgtctagattaatagccaatctttctcaagcatatatctttctaaaaat 390

                                                                       
Query: 365 agagaaggcatgcaaagaagcatagtttaatttttattgacaggaactaagtcataatat 424
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 389 agagaaggcatgcaaagaagcatagtataatttttattgacaggaactaagtcataatat 330

                                                                       
Query: 425 caagaaccaaaatcaataaatatatgaaatatcaggataatttattattcctaagcatag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 caagaaccaaaatcaataaatatatgaaatatcaggataatttattattcctaagcatag 270

                               
Query: 485 tgaaaccttatactttatgt 504
           ||||||||||||||||||||
Sbjct: 269 tgaaaccttatactttatgt 250


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space:   444416
Effective search space used:   444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no366_h21.g1 MSMg01no366_h21.g1 CHROMAT_FILE:
MSMg01no366_h21.g1 PHD_FILE: MSMg01no366_h21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:21 2005
         (493 letters)



>mm_chr6_44019954_44020846
          Length = 893

 Score =  907 bits (469), Expect = 0.0
 Identities = 487/493 (98%), Gaps = 2/493 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtatgtttgggttcatttgcatgatgttataggagctccaaaaataatttatggaaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 agtatgtttgggttcatttgcatgatgttataggagctccaaaaataatttatggaaata 262

                                                                       
Query: 61  gaaatcatagaagccgtttcatctgttgaaggaatcaaatagaaatggaccaaaaaaaaa 120
           ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gaaatca-agcagccgtttcatctgttgaaggaatcaaatagaaatggaccaaaaaaaaa 321

                                                                       
Query: 121 aaaaacccatcttcttgtaatggaaatatcccatcttttgactggtgtcatggttatatg 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aaaa-cccatcttcttgtaatggaaatatcccatcttttgactggtgtcatggttatatg 380

                                                                       
Query: 181 agcatacaaattcatcagaactcactaaatcacactcaatatttgtgctttactgtgcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 agcatacaaattcatcagaactcactaaatcacactcaatatttgtgcttttctgtgcat 440

                                                                       
Query: 241 gtaaatatttcttaataaaaaatatgcttaaaagaagatattggggaagttctgcccatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtaaatatttcttaataaaaaatatgcttaaaagaagatattggggaagttctgcccatc 500

                                                                       
Query: 301 aaagctacaacttactgtgaactacagatacttaaatcttgcacagaacattgattttca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaagctacaacttactgtgaactacagatacttaaatcttgcacagaacattgattttca 560

                                                                       
Query: 361 agttatggtattctagatttgttattttctctacaaatgttcatatgcctcattccttca 420
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 561 agttatggtattctagatttgttattttctctacaaatgttcacatgcctcattccttca 620

                                                                       
Query: 421 ctatgggttgctttcatttatggttaagtaatcctttcaaaatctcaaaacagtctctct 480
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctataggttgctttcatttatggttaagtaatcctttcaaaatctcaaaacagtctctct 680

                        
Query: 481 tttctctcaacaa 493
           |||||||||||||
Sbjct: 681 tttctctcaacaa 693


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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