BAC Information

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BAC

Clone NameMSMg01-366L10
Chromosome6 (Build37)
Map Location 16,506,970 - 16,663,319
singlet/doubletdoublet
Overlap genenone
Upstream geneMdfic, LOC100041116
Downstream geneTcfec, EG435881, Tes, EG232599, Cav2, Cav1, Met, Capza2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-366L10.T7 (MSMg01no366_l10.b1)MSMg01-366L10.TJ (MSMg01no366_l10.g1)
ACCAG474362AG474363
length778793
length of high quality
(start - end)		500 (48 - 547)245 (78 - 322)
definitionCHROMAT_FILE: MSMg01no366_l10.b1 PHD_FILE: MSMg01no366_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:38 2005CHROMAT_FILE: MSMg01no366_l10.g1 PHD_FILE: MSMg01no366_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,662,842 - 16,663,319)(16,506,970 - 16,507,214)
sequence
NNNTCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCC
GCGGAATTCTAGCGCTTCCTAGAGGCTGGCAACCTTCAGTAAATCCAGTA
CCAGCAAATGGGACATTTTCTTCTGGCTGCCATGGGCACTGCATGTATGC
ACAAACATGTATGCAAGTGAAAAGGCATATGCCTAAGGCAAGAAATCAAT
CTAAAGAACTTTGTTGTAACTGTCTTATATTTAAAATATCTTCATAATAA
AATACTCAGCATGTTGACTGAAAAATAGGAAGACCAAAGAATGTGAGTAA
AATATAATAATGTTTCTGCTTTTTATATTTAGATATGAAAGGGGACACTT
GGAAGAAAATAAATCAAAATGTTAACAAGATTATTTTTAAATGTCTTCTT
CAATTTTCTTCTATGTTCAAAAATTATCTACAAAACCAGGCATTACTTTT
ATAATCAAACAGAAATAATAAGCGTTATTTTAAATTAAATCTCATTATCT
AANATTGAATTCATCTTCTTTCCCAAGTGCTCTTCATTTCCTGACGTTTC
TATCAGAACCCGTGNAAACGTTTTGCTGATGTTTACCCAGACTTCTAACT
CATGAAAAAGGAATCTTCCTCCGAAATGTTTTTGACCTTGATGGACACAT
GTAACATACTATGTTGAAACCCCAGGGGACTCCCCCCTTTCCACAAAAAT
GGGGGGGGGAAATAAAGGGAAAACCTAATGTTTCTCACCCCGTTATAATC
CTTCCCCCTCCCCCAACGGTTTGAATTG

NNNCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAAGGAGAGGTGGATGTGAGGGA
CAGAGAGGGGAGAGAGAAAGAAAGAGGGAATGAAAATACTTTAGTTATTT
GTGAATGACTGAAGAAATATTTATTCACAACATTATATTCTATGTCAATT
TTCCTTAGATATAATTTTAAAAGTAGACATTCATGGAGAATAAAACTTGT
AATTTTATTGATCAAGTTTTTGAAATCTAGGTTGGCCAACAGGATGGGAC
TTCTGGCTCAGGGCATGACTCTATTTTATTGAATTTACCCTAAAGCTGTG
CATGTTTACCTCATTTGCTTCATTCCAGCTTAGTCTGGTTCCAGACTGAT
ACCCAGAGGATAGACTTTCTTACCCTAAGCCAGGCCCATTCCATATCTTC
TAACACCATATCTTTGTGGTAATTGTATGAAATAAAAAAGAATACTGGCT
TTCAGAGACAGTAAAGGGACATTTTTTCACACATCACACATCCTTCAATA
TTAAAATTATTCTAATGCTGAAATATTAAAGCACGCAGCCTGTCTGATTA
AAAAACCCCCTTTCTTTAGTGGAAAATTGATGGTACTTTCTAGCGGCTCC
CCGGTGGGTTTTTATTTTTTAAAAAAAGGGGAATTGAAGTCTCCCCCTGG
GGAAACAAAGGGTTTCTGGTTCCTTCCCCCTCCACTGAAAAGTGTTTCTT
TTCTCTCTTTTCGGTTCTCCACTTCTCTCACAAACAAATATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no366_l10.b1 MSMg01no366_l10.b1 CHROMAT_FILE:
MSMg01no366_l10.b1 PHD_FILE: MSMg01no366_l10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:38 2005
         (500 letters)



>mm_chr6_16662620_16663519
          Length = 900

 Score =  872 bits (451), Expect = 0.0
 Identities = 471/478 (98%)
 Strand = Plus / Minus

                                                                       
Query: 23  tagaggctggcaaccttcagtaaatccagtaccagcaaatgggacattttcttctggctg 82
           ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct: 700 tagaggctggcaaccttcagtaaatccagtaccagcaaaagggacattttcttctggccg 641

                                                                       
Query: 83  ccatgggcactgcatgtatgcacaaacatgtatgcaagtgaaaaggcatatgcctaaggc 142
           || |||||||||||||||||||||||||||||||||||  |||| |||||||||||||||
Sbjct: 640 ccttgggcactgcatgtatgcacaaacatgtatgcaagcaaaaaagcatatgcctaaggc 581

                                                                       
Query: 143 aagaaatcaatctaaagaactttgttgtaactgtcttatatttaaaatatcttcataata 202
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 aagaaatcaatctaaagaactttgttgtaactgtcttatatttaaaatatcttcataata 521

                                                                       
Query: 203 aaatactcagcatgttgactgaaaaataggaagaccaaagaatgtgagtaaaatataata 262
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 aaatactcagcatgttgactgaaaaataggaagaccaaagaatgtgagtaaaatataata 461

                                                                       
Query: 263 atgtttctgctttttatatttagatatgaaaggggacacttggaagaaaataaatcaaaa 322
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 atgtttctgctttttatatttagatatgaaaggggacacttggaagaaaataaatcaaaa 401

                                                                       
Query: 323 tgttaacaagattatttttaaatgtcttcttcaattttcttctatgttcaaaaattatct 382
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tgttaacaagattatttttaaatgtcttcttcaattttcttctatgttcaaaaattatct 341

                                                                       
Query: 383 acaaaaccaggcattacttttataatcaaacagaaataataagcgttattttaaattaaa 442
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 acaaaaccaggcattacttttataatcaaacagaaataataagcgttattttaaattaaa 281

                                                                     
Query: 443 tctcattatctaanattgaattcatcttctttcccaagtgctcttcatttcctgacgt 500
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tctcattatctaaaattgaattcatcttctttcccaagtgctcttcatttcctgacgt 223


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space:   436100
Effective search space used:   436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no366_l10.g1 MSMg01no366_l10.g1 CHROMAT_FILE:
MSMg01no366_l10.g1 PHD_FILE: MSMg01no366_l10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:38 2005
         (245 letters)



>mm_chr6_16506770_16507414
          Length = 645

 Score =  474 bits (245), Expect = e-138
 Identities = 245/245 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaggagaggtggatgtgagggacagagaggggagagagaaagaaagagggaatgaaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaggagaggtggatgtgagggacagagaggggagagagaaagaaagagggaatgaaaat 260

                                                                       
Query: 61  actttagttatttgtgaatgactgaagaaatatttattcacaacattatattctatgtca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actttagttatttgtgaatgactgaagaaatatttattcacaacattatattctatgtca 320

                                                                       
Query: 121 attttccttagatataattttaaaagtagacattcatggagaataaaacttgtaatttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attttccttagatataattttaaaagtagacattcatggagaataaaacttgtaatttta 380

                                                                       
Query: 181 ttgatcaagtttttgaaatctaggttggccaacaggatgggacttctggctcagggcatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgatcaagtttttgaaatctaggttggccaacaggatgggacttctggctcagggcatg 440

                
Query: 241 actct 245
           |||||
Sbjct: 441 actct 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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