BAC Information

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BAC

Clone NameMSMg01-366L20
Chromosome6 (Build37)
Map Location 119,344,967 - 119,345,342
singlet/doubletsinglet
Overlap geneAdipor2
Upstream geneBms1, Zfp248, Zfp9, Ankrd26, Cacna1c, Dcp1b, Cacna2d4, Lrtm2
Downstream geneWnt5b, Fbxl14, Erc1, LOC666887, Rad52, Wnk1, EG406236, Ninj2, B4galnt3, Ccdc77, Jarid1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-366L20.T7 (MSMg01no366_l20.b1)MSMg01-366L20.TJ (MSMg01no366_l20.g1)
ACCAG474382AG474383
length773814
length of high quality
(start - end)		491 (77 - 567)285 (77 - 361)
definitionCHROMAT_FILE: MSMg01no366_l20.b1 PHD_FILE: MSMg01no366_l20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:40 2005CHROMAT_FILE: MSMg01no366_l20.g1 PHD_FILE: MSMg01no366_l20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAAAATCCG
CGGAATTCTCATCCAGTTCCCCGACGGATCCGGGTTTTAGCCTAGTTGAG
AGGTGCTGAAGCAGAAGAATTGTCATTTGAGTTTGAGGCCAGTCTAGAGG
ACATAGCATGGTTCTGATGCTTGACTCAGTGTACAGACAAACAACAAATC
CACACCTGGGGCTGGAGAGATGGCTCAGTAGTCAAGGGCACTGGCTGCTC
TAACACAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAAC
CATCTGTAATGAGACTGATGCCCTCTTCTGGTGTGTCTGAAAACAGCTAT
AGTGTACTCATATGCATAAATGAATAAATCTTAAAAAAAATCCGAATCTG
AAACCCCAAATAAACAAGCAACCCCCAATAATCCCTCTAAAAAAAGTAAA
ACCAAACCTGTGCCCAAATTCTGTTTTAGCTGTACATTACCTTTAAGCAA
CTTCTAGGTGGAGACCCCTCTTGATAATAGGTTTTACAGTTTAGCCCAAC
AATAGCTAGGCTCAGTAGCCAATGCCTGCAACTCCAGCAATCTACTGGTG
GAAGGCAGAGCAGTTTAAGGCAAATCTGTACCACCATATTTGAGCTTCAG
AGCAACTTAAAGAATTCGGCCCACAAATATAGAATTTTCTCACCCCCTCC
CCTGTTCCCCGAATTTTATAGGGGTGGGGAATTAAAAAAAAAGGGAACAC
CAATCTTGACCTTTTTCAAAAAN

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGAAAGTACCCAAGGAACTGAAG
GGGTTTGCAGCCCCATAGGAGGAACAACAATATGAACCAACCAGTAGCCC
CAGAGCTCCCTGGGACTAAACCACCAACGAAAGAGTACACATGGAGGGAC
CCATGGCTCCTGCCATATATGTAGCAGAGGATGGCCTTGTTGGACATCAA
TTGGAGGAGAGGCTCTCGGTCCTGGGAAGGCTCGATGCCCTAGTGTAGGG
GAATGTCAGGACAGGGAAGCAGGAGTGGGTGGGTTGGTGAGCAGGGGGAG
GGAGGATGNNNNTTTTTTNNNNNNNNNNNNNNNTTGGNNGGTTTTTNTNT
TTTTTTTTTTTTTTTTTTTTTTNTTTNTNTTTTTTTTTTTTTTTTNTTTT
TTTTTTTTTTTTTTTTTTTTTTTNNTNTTNTTTTTTTTTTTTTTTTTTTT
TTNTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTNNNTT
TTTTNTTTTTNTTTTTTTNNTTTTNTTNTNTTTTNTTTTTTNNNTTTTNT
TTTTNNTTTTNTTTTTTNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTNTNTNTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTNTNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTNTTTTTTN
TTTTNTTTTTTTTTTTTTTTTTTTTTTTNTNNTTTTTTTTTTNNTTTTTT
TTTTTNTTTTTTNT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no366_l20.b1 MSMg01no366_l20.b1 CHROMAT_FILE:
MSMg01no366_l20.b1 PHD_FILE: MSMg01no366_l20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:40 2005
         (491 letters)



>mm_chr6_119344453_119345342
          Length = 890

 Score =  714 bits (369), Expect = 0.0
 Identities = 375/377 (99%), Gaps = 1/377 (0%)
 Strand = Plus / Minus

                                                                       
Query: 115 acaacaaatccacacctggggctggagagatggctcagtagtcaagggcactggctgctc 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 acaacaaatccacacctggggctggagagatggctcagtagtcaagggcactggctgctc 831

                                                                       
Query: 175 taacacaggtcctgagttcaattcccagcaaccacatggtggctcacaaccatctgtaat 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 taacacaggtcctgagttcaattcccagcaaccacatggtggctcacaaccatctgtaat 771

                                                                       
Query: 235 gagactgatgccctcttctggtgtgtctgaaaacagctatagtgtactcatatgcataaa 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 gagactgatgccctcttctggtgtgtctgaaaacagctatagtgtactcatatgcataaa 711

                                                                       
Query: 295 tgaataaatcttaaaaaaaatccgaatctgaaaccccaaataaacaagcaacccccaata 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 tgaataaatcttaaaaaaaatccgaatctgaaaccccaaataaacaagcaacccccaata 651

                                                                       
Query: 355 atccctctaaaaaaagtaaaaccaaacctgtgcccaaattctgttttagctgtacattac 414
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 atccctctaaaaaaaataaaaccaaacctgtgcccaaattctgttttagctgtacattac 591

                                                                       
Query: 415 ctttaagcaacttctaggtggagacccctcttgataataggttttacagtttagcccaac 474
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 590 ctttaagcaacttctaggtggagacccctcttgat-ataggttttacagtttagcccaac 532

                            
Query: 475 aatagctaggctcagta 491
           |||||||||||||||||
Sbjct: 531 aatagctaggctcagta 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 890
Length adjustment: 10
Effective length of query: 481
Effective length of database: 880
Effective search space:   423280
Effective search space used:   423280
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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