BAC Information

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BAC

Clone NameMSMg01-366O21
Chromosome6 (Build37)
Map Location 62,553,805 - 62,554,329
singlet/doubletsinglet
Overlap genenone
Upstream geneC130092O11Rik
Downstream geneGA_x5J8B7W6GG0-4757855-4757501, LOC667099, Grid2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-366O21.T7 (MSMg01no366_o21.b1)MSMg01-366O21.TJ (MSMg01no366_o21.g1)
ACCAG474524AG474525
length7711,130
length of high quality
(start - end)		528 (49 - 576)---
definitionCHROMAT_FILE: MSMg01no366_o21.b1 PHD_FILE: MSMg01no366_o21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:55 2005CHROMAT_FILE: MSMg01no366_o21.g1 PHD_FILE: MSMg01no366_o21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAAAATTACTTGGCCCAGAATTCATTTGAAGCAAAAATGAGAG
AATATGTACTAAGCATATGAATAGGAGAAATCAAGGGACTCTAGAAGCTT
TTAGTTCTTCTAGATAATGAGCTTGTCTTAAAGTGATGAGTGTTACAGGA
AGGGATTGCTAACACATCTTGTTAACTACAGTAGTGAGTACCACCATTCA
TTCTGTATTGGGACCACACCCCCCAGGAAGAGACTGTAGATGTCTGAGTA
TATGAGTAGTAAAGACCCAAGGAGAAATGCAGGTATTGTTTAAACTCACA
AGAAAATGGGAACAAAAGGGAGGAATCTGTCATTTTTTATGAAAAATTAT
AGTAACAGATTCATTACAAAAAAAAATCCTAGTAACATAATATAAAATAA
ACTGAGGTGTTTCAAACATGCAAACAATTAAAATCTAATTTAAACATTTC
ATTAGGTTACTTAGCTCAAACTCTTTCAATTTATAATGAAGAAAGTTCTC
TGGGTAATTACAGGTTTCCCTAATGTTCTAGTATTAGAGGCTTTAATCTG
GAACTTTTTACTCTCATAATGAAAGTGAAAATTATAGTTATGGAGGGCAT
TTGCAACAGCATATTTTTATTATTCCAAGTTTTCTCTGATGCAAAAGTAT
TCTCCGTGTGAAGTTCTCCAAACCGAAAGGATAAAAAGGTTTTATTGTAG
CTTTCTTGAAAATTCCCCCCC

AGAAGACACAAAAGAAATACCCACACTGTGGGTGCTCGGCTATCACACGT
TTACGTTAATCTCATAAGACAAAATAAGAAAATATACTGAGGTTGCTCTG
TCGTCTCTAAGACGCATCCTCTGTGCGTGACTTGCCGGTTGAGTGCTCTA
ACTTTCATATTACCCTTTTCACCCGACCGCGCCGCGTCTCCCTCCGAACA
CACAAGCCAACACATACAAATACCAGCTACGTAACAGATACATCCTTTGC
AACTCCGAAGTGTCCTGGAGCAGACGTGAAGGCGCTGCGGGAGCTCTAGA
ATAAAAGCATAAGCAATGATGTCGAGATCATCGAAGAGTACTACTACATA
TATTGAATAAAGAAACACGACACAGCGCTGGACAAGTTGAACACCAGAAT
ATAATATTACAACAAAAGAGCATAGATAGAACGCGAAAAATAGCCTCCCA
TAACCTAAAAACAATAAACCATATTTATAGTATGACCTATAACGAATGGA
CGAGATTGTCGAGACAAATGAGTGTAGAGCCACCATACGAGGTGCATCTT
GTGTAGGAGAACAAATCTACCGTNAGTGAGACAGGATATCATTATGACAA
TCATTATGCGCACCATATGGACGATATATAACGTTGCAGCATCCATTATC
GCTAAAGGATATACCTAGGGGTATCGACGCTGATATCATATTGCTGCACC
AGACGATGTAGTATTATAAAATATGAAGGATATACTATATGTTATATACT
TTATAAATAGCTTATTTTGCGCCCGGCGCTTGCGCATTAAGAGCCACGTA
TACACGTAGTGATATCCACCCAATAATATGATGTTAATGATAAAGCGGAG
AATGCAGTCTATGATAATGATACTCGGTAGAAAATGCCCGAGGATTGTTG
TAACATATCATAATGAGTGTGAGCTATTCGGACGGACTTATATCTTATAT
TCTGATATCTGTTATTTTGCGATGCTATAGTATAGAGAATGTATATGACG
TGCTCCCGCNACGACAGCGAGGCGGCGCTNCATTTTATATAGTATTNATC
TAACCAACATCACANCACCGGAACCGCGCCCTCGTGGTTTTCTAGATGTA
GATACACTAGCGACGCGGACGATCTATATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no366_o21.b1 MSMg01no366_o21.b1 CHROMAT_FILE:
MSMg01no366_o21.b1 PHD_FILE: MSMg01no366_o21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:55 2005
         (528 letters)



>mm_chr6_62553601_62554529
          Length = 929

 Score =  936 bits (484), Expect = 0.0
 Identities = 515/526 (97%), Gaps = 3/526 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaaattacttggcccagaattcatttgaagcaaaaatgagagaatatgtactaa 64
           ||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 gaattcaaaattacaagggccagaattcatttgaagcaaaaatgagagaatatgtactaa 670

                                                                       
Query: 65  gcatatgaataggagaaatcaagggactctagaagcttttagttcttctagataatgagc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 gcatatgaataggagaaatcaagggactctagaagcttttagttcttctagataatgagc 610

                                                                       
Query: 125 ttgtcttaaagtgatgagtgttacaggaagggattgctaacacatcttgttaactacagt 184
           ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 609 ttgtcttaaagtgatgagtgttataggaagggattgctaacacaccttgttaactacagt 550

                                                                       
Query: 185 agtgagtaccaccattcattctgtattgggaccacaccccccaggaagagactgtagatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 agtgagtaccaccattcattctgtattgggaccacaccccccaggaagagactgtagatg 490

                                                                       
Query: 245 tctgagtatatgagtagtaaagacccaaggagaaatgcaggtattgtttaaactcacaag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tctgagtatatgagtagtaaagacccaaggagaaatgcaggtattgtttaaactcacaag 430

                                                                       
Query: 305 aaaatgggaacaaaagggaggaatctgtcattttttatgaaaaattatagtaacagattc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 429 aaaatgggaacaaaagggaggaatctgtcattttttatgaaaaattatagtaacatattc 370

                                                                       
Query: 365 attacaaaaaaaaatcctagtaacataatataaaataaac--tgaggtgtttcaaacatg 422
           ||||||||||||| ||||||||||||||| ||||||||||  |||||||||||||||| |
Sbjct: 369 attacaaaaaaaa-tcctagtaacataatttaaaataaacagtgaggtgtttcaaacacg 311

                                                                       
Query: 423 caaacaattaaaatctaatttaaacatttcattaggttacttagctcaaactctttcaat 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 caaacaattaaaatctaatttaaacatttcattaggttacttagctcaaactctttcaat 251

                                                         
Query: 483 ttataatgaagaaagttctctgggtaattacaggtttccctaatgt 528
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ttataatgaagaaagttctctgggtaattacaggtttccctaatgt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 929
Length adjustment: 10
Effective length of query: 518
Effective length of database: 919
Effective search space:   476042
Effective search space used:   476042
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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