Query= MSMg01no367_k06.b1 MSMg01no367_k06.b1 CHROMAT_FILE:
MSMg01no367_k06.b1 PHD_FILE: MSMg01no367_k06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:52 2005
(547 letters)
>mm_chr6_116890411_116891357
Length = 947
Score = 961 bits (497), Expect = 0.0
Identities = 532/545 (97%), Gaps = 4/545 (0%)
Strand = Plus / Plus
Query: 5 gaattcaataatta--cctgttgtttaccgtgacttcaaatgtaaggctgtgtggctctg 62
||||||||||| || | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaataaataatc--gttgtttaccgtgacttcaaatgtaaggctgtgtggctctg 262
Query: 63 cctcaagaaggggaatcatctctcagtcacggctgccatctttccaacttcggcagcaca 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cctcaagaaggggaatcatctctcagtcacggctgccatctttccaacttcggcagcaca 322
Query: 123 cactaaactctagcaatgtttcctggaatgtaaggtcccagtgggaggatgggagcagca 182
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct: 323 cactaaactctagcaatgttttctggaatgtaaggtccgagtgggaggatgggagcagca 382
Query: 183 tggctagtggtggcagcagcctggatccaaggaagccatgactggcaacacccaccaggg 242
||| ||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||
Sbjct: 383 tggttagtggtggcagcagtctggatccagggaagccatgactggcgacacccaccagga 442
Query: 243 agttgtacaaaggggaagtcagtggtttgcttaggagtggtgcagagaatgaacggttgt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 agttgtacaaaggggaagtcagtggtttgcttaggagtggtgcagagaatgaacggttgt 502
Query: 303 gtgaggactctgggggtgcttagtgtttctcagattgtctgggaacagactggcttctct 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gtgaggactctgggggtgcttagtgtttctcagattgtctgggaacagactggcttctct 562
Query: 363 aacctgtatctcaccccctgctgtggtttcaggggacttaagagtctccctgggaggtga 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aacctgtatctcaccccctgctgtggtttcaggggacttaagagtctccctgggaggtga 622
Query: 423 ggagcactggtaatttatctgagggccatctgccaagtgttcacagcgtttagcaggttt 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ggagcactggtaatttatctgagggccatctgccaagtgttcacagcgtttagcaggttt 682
Query: 483 ccacccaagtatttcatcttctctctcccgctctttgtttctgctccttcttgattccaa 542
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 683 ccacccaagtatttcatcttctctctcccgctctttgtttctgctcctttttgattccaa 742
Query: 543 ataga 547
|||||
Sbjct: 743 ataga 747
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space: 503169
Effective search space used: 503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no367_k06.g1 MSMg01no367_k06.g1 CHROMAT_FILE:
MSMg01no367_k06.g1 PHD_FILE: MSMg01no367_k06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:52 2005
(552 letters)
>mm_chr6_117027861_117028812
Length = 952
Score = 911 bits (471), Expect = 0.0
Identities = 538/569 (94%), Gaps = 17/569 (2%)
Strand = Plus / Minus
Query: 1 taggttagacccacggatgcaatgccacctctctcggcacttgcatcaggtgctggagac 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 taggtcagacccacggatgcaatgccacctctctcggcacttgcatcaggtgctggagac 585
Query: 61 ccagggagcaggccaatcctcaacaggagtaaagcttattggtgcttgggagtgtggaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 ccagggagcaggccaatcctcaacaggagtaaagcttattggtgcttgggagtgtggaac 525
Query: 121 ttcttgtccaatagaatcttcaggcccaagatgggaaccagattcaacatggttaggccc 180
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 524 ttcttgtccaatagaatcttcaggcccaagatgggagccagattcaacacggttaggccc 465
Query: 181 acagatagcagaaatagccccaatagcagcagcagtagcttagaaacaagtgaaaagacc 240
||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 acagatagcgggaacagccccaatagcagcagcagtagcttagaaacaagtgaaaagacc 405
Query: 241 agagatgactctgggtgaggtccacaggtatacagagaattgcacaagagaggaaaactt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 agagatgactctgggtgaggtccacaggtatacagagaattgcacaagagaggaaaactt 345
Query: 301 tagacccaggtagaaggctctatctgaggataatacctgacaatccgaggaagactcctg 360
|||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 344 tagacccaggtagaagcctctatctgaggacaatacctgacaatcagaggaagactcctg 285
Query: 361 ttagagccctttgccctaaataatagtcacacagagggaagggcactcatccctatagga 420
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 284 ttagagccctttgccctaaataatagtcgcacagagggaagggcactcatccctatagga 225
Query: 421 ctcaggaacttcaaattgttacca-c-------tgagacaaaaacaggtgattaggattt 472
||||||||||||||||| |||||| | ||||| ||||||||||| |||||||||
Sbjct: 224 ctcaggaacttcaaattattaccaacaacaatttgagagaaaaacaggtggttaggattt 165
Query: 473 taaaaataagaaatatgaaggaaatacagac--------ggaaggaaggaaggaaggaag 524
||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 164 taaaaataagaaataggaaggaaatacagacagacagaaggaaggaaggaaggaaggaag 105
Query: 525 gaaggaaggaaggaaa-aaagaaagaaag 552
|||||||||||||||| ||||||||||||
Sbjct: 104 gaaggaaggaaggaaagaaagaaagaaag 76
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space: 510564
Effective search space used: 510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
