BAC Information

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BAC

Clone NameMSMg01-367K23
Chromosome6 (Build37)
Map Location 46,562,151 - 46,562,570
singlet/doubletsinglet
Overlap geneCntnap2
Upstream geneRbpsuh-rs3
Downstream geneLOC622745, LOC100041064, LOC100041078, A930035D04Rik, Cul1, Ezh2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367K23.T7 (MSMg01no367_k23.b1)MSMg01-367K23.TJ (MSMg01no367_k23.g1)
ACCAG475094AG475095
length773798
length of high quality
(start - end)		444 (10 - 453)420 (78 - 497)
definitionCHROMAT_FILE: MSMg01no367_k23.b1 PHD_FILE: MSMg01no367_k23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:55 2005CHROMAT_FILE: MSMg01no367_k23.g1 PHD_FILE: MSMg01no367_k23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGTCAGAGGATCCGCGGAATTCAAATTGATCCATTCCTATCTCCTTGTA
CTAAGGTCAAATCTAAGTGGATTAAGGAACTCCACATAAAACTAAAGACA
GTGAAACTTATAGAGGAGAAAGTAGGGAAAAGCCTTGAAGATATGGGTAC
AGGNGGAAAAAATTCCTGAATAGAAAAGCAATGGCTTGTGCTCTAAGATG
GAGAATCAACAAATGGGACCTCATAAAATTTCAAAGCTTCTGCAAGGCAA
AAGACACCATCAATAAGAAGAAAAAGGCCACCAACAGATTGGGAAAGGAT
CTTTACCTACCCTAAATCAGATAGGGGACTAATATCCAATATATATAAGG
AACTCAAGAAGGTGGACTCCAGAAAATCAAATAACCCCATTAAAAAATGG
GGCTCAGACCTAAACAAAGAATTCTCACCTGAGGAATACCAAATGGCTGA
GAAATACTTNGAAAAATGTTCAACATCCTTAATCTTCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCAACTCACACCAGTCAGAATGGNCCAGATC
AAAAATACCGTTGACAGCACAATGTTGGTAAGATGTGAAGAAAGAGGAAA
ACCCCTCCATTGTTTGTGGGATTGAAAGCTTGTGAAGCCCCCCTGGAAAT
AANCTTGCCGGTCCTCCCAAAATTGGGGTTTGATTTCCCGAGAACCCCGA
AAACCCCCCCTGGGGTTTTTCCCAAAAAGTTCCCCCCGCGAAAAAAGAAC
ATTTTCCCTTTGTTCTTATTTCC

TTCAATGATATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGCTTGTATAAAAACAGGAGGGA
GTGTTTCTGTTATCTGCCACTCAATGCCATGTCCCCACTGTTCTTGTGCC
ACAAAAGCACTGCTATGGCAAAACACTATTCAAGAGAATGTAGTGTTTAA
ATTATTTGAAATATGAGGAAGGTCCCAGAAGATGCAGTGACTAGAGGAAA
TGTAACATTTAGGAAAGCAGGGTTCATTATGCTATAATTAGACATAGCAT
AATGACTGTTGTGACTGCCACAATTAGAAAGCTGCCCTAGACACCTTCAT
AAACATGTTTTAGTAGCCAGGTTGGTACTTGAAGCCATTTCCCCTCTCCA
TCATTTTTACAGTTTCCAGATCAATTGATGTCTCCTACAATTATCATGGG
TCTCTTTCCGGTTCCTGCTGTACACAGGAGCTGCCTAGGTCCTGGTAGAT
TAAATAGCATGTCCATTTTCATAGAACAAATAGGAAAGGGACCAGATACT
GTTCTTCTTATTTTAACTCAATCATCTGTCATCATAAATTCTGTTGAGAG
GGAAACATCTTAGAATTTTTAGACCCTCTTTGATCTATAAGGCAAAAATA
TCCCCCACGGAAAAAATTTTTAAAATAAATCTTAAAATTGTCCCCCACAA
AGGTTATTTTTTAAAAAATAAAATAAACCAATTATTTTCCCTTTCTATAA
TAACCGGCGGGAAGGATTGGAAATAAGGTTCCCCCCCCTCCATAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_k23.g1 MSMg01no367_k23.g1 CHROMAT_FILE:
MSMg01no367_k23.g1 PHD_FILE: MSMg01no367_k23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:55 2005
         (420 letters)



>mm_chr6_46561951_46562770
          Length = 820

 Score =  812 bits (420), Expect = 0.0
 Identities = 420/420 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcttgtataaaaacaggagggagtgtttctgttatctgccactcaatgccatgtcccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tgcttgtataaaaacaggagggagtgtttctgttatctgccactcaatgccatgtcccca 561

                                                                       
Query: 61  ctgttcttgtgccacaaaagcactgctatggcaaaacactattcaagagaatgtagtgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctgttcttgtgccacaaaagcactgctatggcaaaacactattcaagagaatgtagtgtt 501

                                                                       
Query: 121 taaattatttgaaatatgaggaaggtcccagaagatgcagtgactagaggaaatgtaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 taaattatttgaaatatgaggaaggtcccagaagatgcagtgactagaggaaatgtaaca 441

                                                                       
Query: 181 tttaggaaagcagggttcattatgctataattagacatagcataatgactgttgtgactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tttaggaaagcagggttcattatgctataattagacatagcataatgactgttgtgactg 381

                                                                       
Query: 241 ccacaattagaaagctgccctagacaccttcataaacatgttttagtagccaggttggta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ccacaattagaaagctgccctagacaccttcataaacatgttttagtagccaggttggta 321

                                                                       
Query: 301 cttgaagccatttcccctctccatcatttttacagtttccagatcaattgatgtctccta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cttgaagccatttcccctctccatcatttttacagtttccagatcaattgatgtctccta 261

                                                                       
Query: 361 caattatcatgggtctctttccggttcctgctgtacacaggagctgcctaggtcctggta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 caattatcatgggtctctttccggttcctgctgtacacaggagctgcctaggtcctggta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space:   333321
Effective search space used:   333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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