Query= MSMg01no367_m08.b1 MSMg01no367_m08.b1 CHROMAT_FILE:
MSMg01no367_m08.b1 PHD_FILE: MSMg01no367_m08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:02 2005
(501 letters)
>mm_chr6_57963698_57964598
Length = 901
Score = 955 bits (494), Expect = 0.0
Identities = 497/498 (99%)
Strand = Plus / Minus
Query: 4 ggaattctatggatagttttaactcatagcctaggaatacatacgatactgctaacatca 63
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 ggaattctatggaaagttttaactcatagcctaggaatacatacgatactgctaacatca 642
Query: 64 tataatgagggttttgtttaacattagagagatttgtttattctactgcaatgatttctt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 tataatgagggttttgtttaacattagagagatttgtttattctactgcaatgatttctt 582
Query: 124 ttttggattgttttcataattactcttgtttacactttattcttttatatgagaaattat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ttttggattgttttcataattactcttgtttacactttattcttttatatgagaaattat 522
Query: 184 tcaagctgactaagaaatagctcaagtcttacatctaatgcttacaggtaagcattagaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tcaagctgactaagaaatagctcaagtcttacatctaatgcttacaggtaagcattagaa 462
Query: 244 ttagttatgcaagcatatagtttctgggtaatccatgtcttatacgtataacatttgtgc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 ttagttatgcaagcatatagtttctgggtaatccatgtcttatacgtataacatttgtgc 402
Query: 304 atataacaagcacatgtttaagacagggatgcaatattctttatggaattttttcaagaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 atataacaagcacatgtttaagacagggatgcaatattctttatggaattttttcaagaa 342
Query: 364 ctgttaggaacaggtatatctatctagttttcaagtacattttaatctgtaggctctttg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ctgttaggaacaggtatatctatctagttttcaagtacattttaatctgtaggctctttg 282
Query: 424 ggtaattccaggttcagtcaacatttagtattgaatgacagaaatgatcatggaaaataa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ggtaattccaggttcagtcaacatttagtattgaatgacagaaatgatcatggaaaataa 222
Query: 484 agttttaggatttaatga 501
||||||||||||||||||
Sbjct: 221 agttttaggatttaatga 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space: 437481
Effective search space used: 437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no367_m08.g1 MSMg01no367_m08.g1 CHROMAT_FILE:
MSMg01no367_m08.g1 PHD_FILE: MSMg01no367_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:02 2005
(576 letters)
>mm_chr6_58313067_58314050
Length = 984
Score = 853 bits (441), Expect = 0.0
Identities = 546/583 (93%), Gaps = 10/583 (1%)
Strand = Plus / Plus
Query: 3 aaggatatgtaaatgtg-aaaaattacagatagacactaaattagttaataat---tgta 58
||||||||| ||||||| |||||||||||||| |||||||||||||||||| | ||||
Sbjct: 203 aaggatatgcaaatgtgaaaaaattacagataaacactaaattagttaatatttgctgta 262
Query: 59 tatttttagcttaagttacatattattaaacactcacagacagtcaatttgagaaaagta 118
|||||||||||||| ||||||| |||||||||||||||| |||| || ||||||||||||
Sbjct: 263 tatttttagcttaaattacatactattaaacactcacagccagttaacttgagaaaagta 322
Query: 119 aaatgagaaagtacaatttatgataacttaatactatgaaggtaatcctgcacaccaata 178
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aaatgagaaagtacaatttacgataacttaatactatgaaggtaatcctgcacaccaata 382
Query: 179 agtgtgtttctttgtttatcaccctctaaggtatttcagtgttttgtttcaggatgg-aa 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 383 agtgtgtttctttgtttatcaccctctaaggtatttcagtgttttgtttcaggatgggaa 442
Query: 238 aatgagcgcatttggaaatacttatgtagaaccattttgttgtttgttgtcactctaagg 297
||||||| | ||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 443 aatgagcacgtttggcaatacttatgtagaatggttttgttgtttgttgtcactctaagg 502
Query: 298 atattactatgagctccctaaatgttgcatctggagcaactttttacatgtatatgaatg 357
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 503 atattactatgagctccctaaatgttgcatctggagaaactttttacatgtatatgaatg 562
Query: 358 tacagtccttgtaaaatgatggattgcatgacatgttcactgaatatataatacctattt 417
|||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 563 tacaaaccctgtaaaatgatggattgcatgacatgttcactgaatatataaaacctattt 622
Query: 418 gtcatctttactctattagtcttttctctatct--ttagcaacctttctgct-aggccct 474
|||| ||||| ||||||||||||||||| ||| ||||||||||||||| | |||||||
Sbjct: 623 atcatatttaccctattagtcttttctctctctctttagcaacctttctg-tcaggccct 681
Query: 475 gctcttctgagtagcccctttctagtgttacctatataaccagagatcatattaagataa 534
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 682 tctcttctgagtagcccctttctagtgttacctatataaccagagaccatattaagataa 741
Query: 535 atatatactttttta-ttaatcattacattgatacctttatgt 576
||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 742 atatatactttttaaattaatcattacattgatacctttatgt 784
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 984
Length adjustment: 10
Effective length of query: 566
Effective length of database: 974
Effective search space: 551284
Effective search space used: 551284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
