Query= MSMg01no367_o04.b1 MSMg01no367_o04.b1 CHROMAT_FILE:
MSMg01no367_o04.b1 PHD_FILE: MSMg01no367_o04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:10 2005
(344 letters)
>mm_chr6_117966519_117967262
Length = 744
Score = 642 bits (332), Expect = 0.0
Identities = 341/344 (99%)
Strand = Plus / Plus
Query: 1 gcctcagtttccccatctttcagtgaaggtaagtgtagacattaagagtcccggacctct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcctcagtttccccatctttcagtgaaggtaagtgtagacattaagagtcccggacctct 260
Query: 61 atgacacacaattccatccccatagctctgagatcatctggtaaagatatgggacattat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgacacacaattccatccccatagctctgagatcatctggtaaagatatgggacattat 320
Query: 121 gtgccaggaggacacagtgcttcgtatctacctgtgaaatctctccagcttggctagcga 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggccaggaggacacagtgcttcgtatctacctgtgaaatctctccagcttggctagcga 380
Query: 181 ctaagtttgcttttgtccacagtgctgagcgcctggccttccaggtgtggacagcaggta 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 ctaggtttgcttttgtccacagtgctgagcgcctggccttccaggtgtggacagcgggta 440
Query: 241 gagggatgggctgaggcatctcagttgagtctgtcagatccaggaaccacactcttctta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagggatgggctgaggcatctcagttgagtctgtcagatccaggaaccacactcttctta 500
Query: 301 ggccagcaggggaagcagtaatgagtcccaccaatccctaagaa 344
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggccagcaggggaagcagtaatgagtcccaccaatccctaagaa 544
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space: 246225
Effective search space used: 246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no367_o04.g1 MSMg01no367_o04.g1 CHROMAT_FILE:
MSMg01no367_o04.g1 PHD_FILE: MSMg01no367_o04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:10 2005
(481 letters)
>mm_chr6_118169060_118169941
Length = 882
Score = 909 bits (470), Expect = 0.0
Identities = 479/482 (99%), Gaps = 1/482 (0%)
Strand = Plus / Minus
Query: 1 cctctggaagatttaaaaataggccatggaccagcatgagcaaggcatattatctttggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 cctctggaagatttaaaaataggccatggaccagcatgagcaaggcatattatctttggc 623
Query: 61 aatttagggccagatgctcatagaatttcttagctgacagaacaaaattgtggtaagcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 aatttagggccagatgctcatagaatttcttagctgacagaacaaaattgtggtaagcag 563
Query: 121 aagatacacacacaca-aaaaaaaaataattcagagttaaatgctggaggaatggtacag 179
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 562 aagatacacacacacacaaaaaaaaataattcagagttaaatgctggagtaatggtacag 503
Query: 180 gaaatgctagcaagcaagtgctccattgcaaataagacatccaataagcagatcaggaca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gaaatgctagcaagcaagtgctccattgcaaataagacatccaataagcagatcaggaca 443
Query: 240 cacccacaagcaaactggaagggaggtctggacccagaaagaacgcaaaaccatccattc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cacccacaagcaaactggaagggaggtctggacccagaaagaacgcaaaaccatccattc 383
Query: 300 aagggaacaacaaggaatatcagacatagggaaccagcccatgctggtacctgatgccag 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 382 aagggaacaacaaggaatatcagacatagggaaccagcccatgctggtacctgattccag 323
Query: 360 ggctgatccaagagaccactgtaataaaagaggtcagctgtcctggaggctcattctgag 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ggctgatccaagagaccactgtaataaaagaggtcagctgtcctggaggctcattctgag 263
Query: 420 ctgccaagctgttgacagtgaaagccgtggtcctggggggcccacactgagtggccaaac 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ctgccaagctgttgacagtgaaagccgtggtcctggggggcccacactgagtggccaaac 203
Query: 480 tg 481
||
Sbjct: 202 tg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 882
Length adjustment: 10
Effective length of query: 471
Effective length of database: 872
Effective search space: 410712
Effective search space used: 410712
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
