BAC Information

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BAC

Clone NameMSMg01-367O17
Chromosome6 (Build37)
Map Location 48,400,661 - 48,400,982
singlet/doubletsinglet
Overlap geneSspo
Upstream geneA930035D04Rik, Cul1, Ezh2, Rn4.5s, EG384379, Pdia4, LOC100041154, Zfp786, Zfp398, Zfp282, Zfp212, A230106D06Rik, AI894139, LOC623601, Zfp777, Zfp746, LOC665990, Krba1, Zfp467
Downstream geneEG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305, Repin1, Zfp775, AI854703, Gimap8, LOC100040560, Gimap9, Gimap4, Gimap6, Gimap7, LOC100041450, Gimap1, Gimap5, Gimap3, Tmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik, LOC100040589, Doxl2, Svs1, Gpnmb, LOC666011, Igf2bp3, LOC100040626, Tra2a, Ccdc126, D330028D13Rik, Stk31
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367O17.T7 (MSMg01no367_o17.b1)MSMg01-367O17.TJ (MSMg01no367_o17.g1)
ACCAG475271AG475272
length746775
length of high quality
(start - end)		481 (8 - 488)524 (77 - 600)
definitionCHROMAT_FILE: MSMg01no367_o17.b1 PHD_FILE: MSMg01no367_o17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:13 2005CHROMAT_FILE: MSMg01no367_o17.g1 PHD_FILE: MSMg01no367_o17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTCGAGAGGATCCGCGGAATTCCACAAATTTCCAAGCTCTGCACTATGG
GTTGTTGTGCTGTGGCTGCTATCTTGAGAGAGTAAAGTATGACACATACA
CTATATCCACACATACACTATATCCACATCACACATACACTATACACACA
CATCACATACACACTATACACACACATCACATACACTATACACTCACCAC
ACATATATTATATCCACACATACACTATACACACACCACACATACACTAT
ATCCACATCACACATACACTATACACACACATCAAATACACACTATACAC
ATACTATCACATACACTATACACACACCACACATTCACTATACATGCACC
ATAATACACTACATACACATTTCACTCACACTACATATACACATATAGCA
CACATACTATATATACATTACATGTGCCACAACACACAACATAAACCACA
TACCTCATAGCATTCATACACACATACCACACTTCTACACAGGCAATACA
TACATACTACATACACTCTGTCCACCCACCCATACCATATAGACACATAC
ACGCTTAGCCCCAGCCTCCTGTCCCAGGCATGATGAAACTCTCATGAGGG
TCACGGGAGGGAAACAGAGAGGGCTGCCCCACGTCCCGGTGAAGAAAAAA
GGGAGAGGGGGAAGCCCCGGTTATGTTTTCCCGACCCCCAATTTCTCAAA
CCTTCCACAAGAATCCGGGGGGGGGTGGGGGATTGTGTTCCTTCTN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGACCTTTAAAGAAGGCCTA
ATACCAATACTCTTCAAACTATTCCACATAATAGAAACAGAAGGAACACT
ACCCAATTCATTCTATGAAGCCAGAGTTATGCTTATACATAAACTACACA
AAGACCAAACAAAGAAAGAGAAATTCAGAACAATCTCCCTTATGAACATT
GATGCAAAAACACTCAATAAAATTCTTGCCTACTGATTTCAAGGACACAT
TGAAACTATCATCTACCATGATCAAGTAGGCTTCATGCCAGGGGTATGGA
ATATTTCAATATATGGAAATCCACCAACATAATCCACTATATAAATGATC
ACAAAGAAAAAAGCCATATGATCATTTCATTAGATGCTGAAAAGGCATTT
GACAAAATTCAGCATCCCTTCGTGTTAAAAGTCTTGGAAAGATCAGGAAT
TCAAGACCTAAACATAGTAAAAGCAAAAACCCAGCAAACCAGTAGCCAAC
ATCAAACTAAATGGACAGAAACTTGAAGCAAACCCACTAAAATCAGGGAC
TAGACAAGGCTCCCCACTCTCTCCTTATCTATTCAATATAGGACTTGAAG
TTTGAGCTAGAGCAATTAGACAATGAAAGAAAGTCAAAGGGATACAAATT
GGAAAAGGAGGAAGCCAAATATCTCTCATTGCAAAGATATGATGGGATTC
TAAATGACCCCCAAATTCCCTTAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_o17.b1 MSMg01no367_o17.b1 CHROMAT_FILE:
MSMg01no367_o17.b1 PHD_FILE: MSMg01no367_o17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:13 2005
         (481 letters)



>mm_chr6_48400661_48401541
          Length = 881

 Score =  594 bits (307), Expect = e-174
 Identities = 319/323 (98%), Gaps = 2/323 (0%)
 Strand = Plus / Minus

                                                                       
Query: 11  gaattc-cacaaatttccaagctctgcactatgggttgttgtgctgtggctgctatcttg 69
           |||||| ||||||||| ||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 322 gaattcacacaaatttgcaagctctgcactat-ggtttttgtgctgtggctgctatcttg 264

                                                                       
Query: 70  agagagtaaagtatgacacatacactatatccacacatacactatatccacatcacacat 129
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 agagagtaaagtatgacacatacactatatccacacatacactatatccacatcacacat 204

                                                                       
Query: 130 acactatacacacacatcacatacacactatacacacacatcacatacactatacactca 189
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 acactatacacacacatcacatacacactatacacacacatcacatacactatacactca 144

                                                                       
Query: 190 ccacacatatattatatccacacatacactatacacacaccacacatacactatatccac 249
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 ccacacatatattatatccacacatacactatacacacaccacacatacactatatccac 84

                                                                       
Query: 250 atcacacatacactatacacacacatcaaatacacactatacacatactatcacatacac 309
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83  atcacacatacactatacacacacatcaaatacacactatacacatactatcacatacac 24

                                  
Query: 310 tatacacacaccacacattcact 332
           |||||||||||||||||||||||
Sbjct: 23  tatacacacaccacacattcact 1



 Score =  176 bits (91), Expect = 3e-48
 Identities = 164/199 (82%), Gaps = 30/199 (15%)
 Strand = Plus / Minus

                                                                       
Query: 209 acacatacactatacacacaccacacatacactatatccacatcacacatacactataca 268
           ||||||||||||||      ||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 acacatacactata-----tccacacatacactatatccacatcacacatacactataca 194

                                                                       
Query: 269 cacacatcaaatacacactatacacatactatcacatacactatacacacaccacacat- 327
           ||||||||| |||||||||||||||| || |||||||||||||||||| |||||||||| 
Sbjct: 193 cacacatcacatacacactatacacacac-atcacatacactatacactcaccacacata 135

                                                                       
Query: 328 tcactata--catgcaccataatacactacatacacatttcactcacac-taca-tata- 382
           | | ||||  ||  |||    ||||||||  ||||||   ||| ||||| |||| |||| 
Sbjct: 134 t-attatatcca--cac----atacacta--tacaca---cac-cacacatacactatat 88

                              
Query: 383 -cacatatagcacacatac 400
            |||||    |||||||||
Sbjct: 87  ccacat----cacacatac 73


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 69
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 3
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space:   410241
Effective search space used:   410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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