BAC Information

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BAC

Clone NameMSMg01-368H08
Chromosome6 (Build37)
Map Location 130,625,504 - 130,626,090
singlet/doubletsinglet
Overlap geneEG667798
Upstream geneKlrc1, LOC640755, Klri1, Klri2, Gm156, Klra17, Klra5, LOC667764, Klra6, LOC100038893, LOC100038894, LOC100038895, Klra4, LOC667769, LOC100038897, Klra8, EG654449, Klra9, Klra7, LOC100038898, Klra12, Klra10, Klra13, Klra3, Klra1, LOC100038902, LOC100038903, LOC625436, EG625473, LOC640779, LOC667793
Downstream geneEG625558, LOC625566, EG636947, LOC625628, EG625648, LOC667830, EG434094, Klra2, LOC434095, 2010012C16Rik, Styk1, Csda, LOC625758, 5430401F13Rik, LOC625781, Tas2r130, Tas2r107
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368H08.T7 (MSMg01no368_h08.b1)MSMg01-368H08.TJ (MSMg01no368_h08.g1)
ACCAG475679AG475680
length758745
length of high quality
(start - end)		591 (43 - 633)491 (66 - 556)
definitionCHROMAT_FILE: MSMg01no368_h08.b1 PHD_FILE: MSMg01no368_h08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:54 2005CHROMAT_FILE: MSMg01no368_h08.g1 PHD_FILE: MSMg01no368_h08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:54 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATACAGGTGAGAAACCTTACAAATGTAATGAGTGTGAGAAATCTTTTA
CAAAGTCACACAAACTTCAAGTTCACTACAGAATCCATACAGGACAGAAG
CCTTACAAATGTAATGAATGTGCCAAGTCTTTTATACGGAACACAGACCT
TAAAGTTCACTACCGAATCCATACAAGAGTGAAACCCTAAATTATTTTTT
GGTTGATGCAAATCTTTTACAAAGAACTCAGAGCTTAAAGTTCACCAAAT
AATCTGTACAGGGGATAAAACTTATAAATATAATCAAAGTGGCAAATCCT
TTACACAACACTCAGATCATGAAGCTCACCACAGAATCCATACTGGAGAG
AAACTTTACAAATAAAATGAAGGTGGCATATCATTCAATAAATCTCCAAG
TCTTTATTTTCACTACAGAATCTACACAAGAAATAAACCTTACAAATGTT
GACTTGTGACAATCTTTAACCTGGTCCTCCACTTTCCAAAGTTCATCANA
TTTCATATACTGGAAAACAACCTTGTAAGTGTAGTGAGTGTAGAAAATAT
TTTTTCCTATCCTCAAATCTTCAATATCACCTCAGAATACNAACTAGAAA
CTACCTTACTAATGTAAGGAATTTGGGATATTCTTGACATGGNAACAGTG
CCTTCTAAGATGACCCCACATGCATCCTGGAAAGAAAATTGGGAATATAC
CGGACAGG

TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTTGAGTTCCCTCTCCACACATTGGGCATTATGTC
TTAGGTTTCCCACATAGACTCCTGAGAGTGTCTTACTTCACAGGCCTCTA
GTAATTTCTAGAGGGTCCCTTGAACCCCCAATCCACTGAGGCTGCACATT
TTTCTTCATTTTCTCACCCTCTTGGCTTCTCTCTTGTCTCCACCATTCCT
GATCCTGTTTTCTTTTTCCCCTCCCTTTCCAACCCATGTCAGTTCCTCCC
GCTGAAACCCATGATTATCTTTTTCCTCCTTCTCAGTGGGAATAACTTAT
GCCCACCTGGGTCTTTCAGATTTTTAAACTTCTTATGATCTGTGGCTTTT
ACACTAGGTATTCTGTAGTTTTGGGCTACTTATACACTCATTAGTGAGTA
CATGACATCACTTTGGGTCTGGATTACCTCACCCAACATATTTTCTAGTT
CCATCTATTTGCTTGCAATATTCTTGATGTCCTCTTTTTTAGTTGCTTGG
TATTATGCAATTGTGTAAATAACCTTATTTTCTGTATTCATTCTTCCGTT
TACACACATCCAGTGTGTTTCAGCTTCTGGCTATTACAAATAAGGTTACT
ATGAACATAGCGAAACATGTGTCTATGTGGTATGTTGTGGGATCTTTTGT
GTGGATGCCAAGAGAGATAAAACTGGGCCTCCAATAAAAAAGGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_h08.b1 MSMg01no368_h08.b1 CHROMAT_FILE:
MSMg01no368_h08.b1 PHD_FILE: MSMg01no368_h08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:54 2005
         (591 letters)



>mm_chr6_130625365_130626355
          Length = 991

 Score = 1106 bits (572), Expect = 0.0
 Identities = 583/587 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatacaggtgagaaaccttacaaatgtaatgagtgtgagaaatcttttacaaagt 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 gaattcatacaggagagaaaccttacaaatgtaatgagtgtgagaaatcttttacaaagt 667

                                                                       
Query: 65  cacacaaacttcaagttcactacagaatccatacaggacagaagccttacaaatgtaatg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 cacacaaacttcaagttcactacagaatccatacaggacagaagccttacaaatgtaatg 607

                                                                       
Query: 125 aatgtgccaagtcttttatacggaacacagaccttaaagttcactaccgaatccatacaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 aatgtgccaagtcttttatacggaacacagaccttaaagttcactaccgaatccatacaa 547

                                                                       
Query: 185 gagtgaaaccctaaattattttttggttgatgcaaatcttttacaaagaactcagagctt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 546 gagtgaaaccctaaattattttttggttgatgcaaatcttttacaaagaactcggagctt 487

                                                                       
Query: 245 aaagttcaccaaataatctgtacaggggataaaacttataaatataatcaaagtggcaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 aaagttcaccaaataatctgtacaggggataaaacttataaatataatcaaagtggcaaa 427

                                                                       
Query: 305 tcctttacacaacactcagatcatgaagctcaccacagaatccatactggagagaaactt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tcctttacacaacactcagatcatgaagctcaccacagaatccatactggagagaaactt 367

                                                                       
Query: 365 tacaaataaaatgaaggtggcatatcattcaataaatctccaagtctttattttcactac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tacaaataaaatgaaggtggcatatcattcaataaatctccaagtctttattttcactac 307

                                                                       
Query: 425 agaatctacacaagaaataaaccttacaaatgttgacttgtgacaatctttaacctggtc 484
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 agaatctacaaaagaaataaaccttacaaatgttgacttgtgacaatctttaacctggtc 247

                                                                       
Query: 485 ctccactttccaaagttcatcanatttcatatactggaaaacaaccttgtaagtgtagtg 544
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 246 ctccactttccaaagttcatcaaatttcatatactggaaaacaaccttgtaagtgtagtg 187

                                                          
Query: 545 agtgtagaaaatattttttcctatcctcaaatcttcaatatcacctc 591
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 agtgtagaaaatattttttcctatcctcaaatcttcaatatcacctc 140


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space:   569961
Effective search space used:   569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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