Query= MSMg01no368_m17.b1 MSMg01no368_m17.b1 CHROMAT_FILE:
MSMg01no368_m17.b1 PHD_FILE: MSMg01no368_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:20 2005
(558 letters)
>mm_chr6_83673504_83674461
Length = 958
Score = 592 bits (306), Expect = e-173
Identities = 445/572 (77%), Gaps = 125/572 (21%)
Strand = Plus / Minus
Query: 1 atagagagactccatctccatttccctccctctctctctctgtctctctctctctctg-- 58
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 atagagagactccatctccatttccctccctctctctctctgtctctctctctctctgtc 518
Query: 59 ----tctctctctgtctc------tctctctctctctctc--tctctctctctgtctctc 106
|||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 517 tctctctctctctgtctctctctgtctctctctctctctctttctctctctctgtctctc 458
Query: 107 tttctcacacacacacacaccacacacaaaggagacaattcttacgtcaccacacagcaa 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tttctcacacacacacacaccacacacaaaggagacaattcttacgtcaccacacagcaa 398
Query: 167 catctatcacaaatcaagagtcactagagtggtgtgactctgggaagagagtctccaagc 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 catctatcacaaatcaagagtcactagagtggtgtgactctgggaagagagtctccaagc 338
Query: 227 agagccacaggccctcagggatcttgattgtttacaaagatggcatttcatattggttgg 286
|||||||||||||||||||||||||
Sbjct: 337 agagccacaggccctcagggatctt----------------------------------- 313
Query: 287 aggaacgacagggctgttaaagacctgggtcttggacagccagctcattgtttgggataa 346
Sbjct: 313 ------------------------------------------------------------ 313
Query: 347 gctgatccatctgacattgcatgcataccaaattaacacttaaatgtgaaaaatagagct 406
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ----------------ttgcatgcataccaaattaacacttaaatgtgaaaaatagagct 269
Query: 407 tcaaaaatcaaagaaacacacgcgcgtgcatacacaggcataaaacacaaaaaggaaaac 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tcaaaaatcaaagaaacacacgcgcgtgcatacacaggcataaaacacaaaaaggaaaac 209
Query: 467 aaggaccaaggagactaattatgagcaaattcttctgcaggaagtgagagagttaaacgc 526
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 208 aaggaccaaggagactaattatgagcaaattcttctgcaggaagtgagagagttaagcgc 149
Query: 527 agagacccataacttgcggaatagtcagaaca 558
|||||| |||||||||||||||||||||||||
Sbjct: 148 agagactcataacttgcggaatagtcagaaca 117
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 92
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space: 519504
Effective search space used: 519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no368_m17.g1 MSMg01no368_m17.g1 CHROMAT_FILE:
MSMg01no368_m17.g1 PHD_FILE: MSMg01no368_m17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:20 2005
(474 letters)
>mm_chr6_83487109_83487982
Length = 874
Score = 862 bits (446), Expect = 0.0
Identities = 467/474 (98%)
Strand = Plus / Plus
Query: 1 taggccaacctacacataacagttttaaggtaagaagcagttacaaaggtagagacaatt 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 taggccaacctacacataacagttttaagataagaagcagttacaaaggtagagacaatt 260
Query: 61 tataaaaatgtcagaagggtgcaaggtaaggattggagagaagaaagggaaggaggaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tataaaaatgtcagaagggtgcaaggtaaggattggagagaagaaagggaaggaggaaat 320
Query: 121 gatgtaattatattttaattaaagaaatatgagctcacacatgagcacacaaataagtgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatgtaattatattttaattaaagaaatatgagctcacacatgagcacacaaataagtgt 380
Query: 181 caaagtaaaacaaggccttgctttgtagccccagctggtcttctgagtactgggattata 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 caaagtaaaacaaggccttgctttgtagccccagctggtcttctgagtactgggattaca 440
Query: 241 ggcaggcatggttacccgcacaccctacatcttatttagaggtctttctttaataacgtt 300
||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 ggcaggcatgggtatccgcacaccctacatcttatttagaggtttttctttaataacgtt 500
Query: 301 ttcagtaatggagagaacaagggaggagaaaaacaaggatacaggtttaaacaacaggat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcagtaatggagagaacaagggaggagaaaaacaaggatacaggtttaaacaacaggat 560
Query: 361 taaatcttacttacggagcacaggggcagatgtgaaatgatcactattctccccccagct 420
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaatcctacttacggagcacaggggcagatgtgaaatgatcactattctccccccagct 620
Query: 421 gtagacaacagactctggaaaatgaccctcaacagaactccaccaggctgtgga 474
||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtagacaacaggctctggaaaatgaccctcaacagaactccaccaggctgtgga 674
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space: 400896
Effective search space used: 400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
