BAC Information

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BAC

Clone NameMSMg01-368O13
Chromosome6 (Build37)
Map Location 91,056,229 - 91,246,676
singlet/doubletdoublet
Overlap geneNup210, Hdac11, Fbln2
Upstream geneV1rb1, V1ra1, LOC625050, V1ra7, V1ra8, V1rb3, LOC100043191, V1r-ps5, V1ra9, BC048671, Chst13, Uroc1, Zxdc, Ccdc37, Klf15, Aldh1l1, Slc41a3, Iqsec1, LOC100043646, EG665685
Downstream geneLOC665716, Wnt7a, LOC100043659, LOC625420, Chchd4, Tmem43, Xpc, Lsm3, Slc6a6, Grip2, C130022K22Rik, 4930590J08Rik, Fgd5, Nr2c2, Mrps25, Zfyve20, Trh, LOC665805
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368O13.T7 (MSMg01no368_o13.b1)MSMg01-368O13.TJ (MSMg01no368_o13.g1)
ACCAG476023AG476024
length716731
length of high quality
(start - end)
484 (64 - 547)222 (421 - 642)
definitionCHROMAT_FILE: MSMg01no368_o13.b1 PHD_FILE: MSMg01no368_o13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:29 2005CHROMAT_FILE: MSMg01no368_o13.g1 PHD_FILE: MSMg01no368_o13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:06:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,056,229 - 91,056,712)(91,246,455 - 91,246,676)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CAGCTTCTCCTCCAGCTCCATATCTGCCTATGTGCTATCCACTGTGGTGG
TAATGGATTAGACCTCTGAAACCGTAAGCAAGACCCAATTAAATGCTTTC
CTTATAAGAAATAGATATCATGGTGGTGGTGTCTCTTCAGAGCAATGGTA
CATTGACTGAGGCACACACATTTCATTCAAATCCCCTATGGCACTATGTT
TTAAGTTGTTTTACCCTGTCTAAGGCTATCGGTCCTGAACTGATGATACA
GTACCTCTGGTTTGCACACTAGCTATCTATCCACTGATTCTCAGAAGGGG
AGGAAGAACCTAGTTGGGGGCTGGGAACAGGACAAGGTCAGTAGAGACTA
CCTCACTACAATGTTTATAGGACTCTTAACCGCAAGAGAAAGGAATTGCA
GGTCAGTATGCTTCCCTGAACCTTGATTCTGGTTCTGCCTCCTCCTCCAG
GCCTCCCCAACAGAGCAGACACAGACACTGACACCCCCAGATCCACAGGC
AGGTTCAGGCATGAGCCTCAACCATCTGAAGTCAGATCTCAGCTTATAAG
CCCCTCTCTCCCACAACTCTCCCATCTTTATCCCTTTGCTAATGCCTTTG
CACATCACATGTCCTTTGTAGGAGCCCAATCCTCCCGTTCTCACAGCTAA
AGTTTATGCCTATACG
CGATGCAGTGGGAGGCCGGGNGGNCGCCTGTTTCAGACCGGGAGGNGAAC
TATAGAATTTACAAAAAAATTCTTGAACGTATGCATGCATGGTGATGCAA
GGGCAGTAAGAGCTGTTGACAGTCCTTCTGGGTCTCACAATGAATCCAGA
CCATGGAAGATGCAGAGGTTGAGGTAGCCTTGTGTGGCTATGTTTTCAAG
AAGTTTGTCAGCAAATAGAGAAAAGAAACAGCAGGGAACTTAAGCTTTGC
TCTCAGGTGCAAGTCACCTAAGCATGTTTGAGGCTCAAGACTCAGGAGAA
GGAACTGATAGAGTGTTTCCTATTTTATGGATGGAGAAAGGGGTCCAACC
CTTGGAAGTAGGGTGGATTGAAGAATTTACAAAAGGCATCCCTGCCATGG
GTGACACACTCTCCCCCAACGCCAAAGTAATCACATGCAGATGTGGGTCA
TTCTGAGAGGACTAAGGTGCCGCAGTCTTGACGAGCAGGAGCAACGACAA
TGCTTTCTACCAACATGCATCAAATGCCCACTCGATTCCAAGAACGGCGG
AGGATTTCACTTGTGGCACAGTCAAAAGTCGGTGCCGTAAAACCTATGGC
TGTCTCTGGGAGTAAAAACAGTTATGCCACCTCTGGTTTCTCTTCTTTTA
TAATCTGTTTATTGCTTCTAAAATCAAAGCCCCAACTGCAGATGGATTTT
CCATGTTGTACCCCAAGGGGCTCTGTAACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_o13.b1 MSMg01no368_o13.b1 CHROMAT_FILE:
MSMg01no368_o13.b1 PHD_FILE: MSMg01no368_o13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:29 2005
         (484 letters)



>mm_chr6_91056029_91056912
          Length = 884

 Score =  905 bits (468), Expect = 0.0
 Identities = 480/484 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agctccatatctgcctatgtgctatccactgtggtggtaatggattagacctctgaaacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agctccatatctgcctatgtgctatccactgtggtggtaatggattagacctctgaaacc 260

                                                                       
Query: 61  gtaagcaagacccaattaaatgctttccttataagaaatagatatcatggtggtggtgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaagcaagacccaattaaatgctttccttataagaaatagatatcatggtggtggtgtc 320

                                                                       
Query: 121 tcttcagagcaatggtacattgactgaggcacacacatttcattcaaatcccctatggca 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttcagagcaatggtacgttgactgaggcacacacatttcattcaaatcccctatggca 380

                                                                       
Query: 181 ctatgttttaagttgttttaccctgtctaaggctatcggtcctgaactgatgatacagta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctatgttttaagttgttttaccctgtctaaggctatcggtcctgaactgatgatacagta 440

                                                                       
Query: 241 cctctggtttgcacactagctatctatccactgattctcagaaggggaggaagaacctag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctctggtttgcacactagctatctatccactgattctcagaaggggaggaagaacctag 500

                                                                       
Query: 301 ttgggggctgggaacaggacaaggtcagtagagactacctcactacaatgtttataggac 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 ttgggggctgggaacaggacaaggtcagtagagactacctcacttcaatgtttataggac 560

                                                                       
Query: 361 tcttaaccgcaagagaaaggaattgcaggtcagtatgcttccctgaaccttgattctggt 420
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcttaaccttaagagaaaggaattgcaggtcagtatgcttccctgaaccttgattctggt 620

                                                                       
Query: 421 tctgcctcctcctccaggcctccccaacagagcagacacagacactgacacccccagatc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctgcctcctcctccaggcctccccaacagagcagacacagacactgacacccccagatc 680

               
Query: 481 caca 484
           ||||
Sbjct: 681 caca 684


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space:   414276
Effective search space used:   414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no368_o13.g1 MSMg01no368_o13.g1 CHROMAT_FILE:
MSMg01no368_o13.g1 PHD_FILE: MSMg01no368_o13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:29 2005
         (222 letters)



>mm_chr6_91246255_91246876
          Length = 622

 Score =  422 bits (218), Expect = e-122
 Identities = 221/222 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gccaaagtaatcacatgcagatgtgggtcattctgagaggactaaggtgccgcagtcttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 gccaaagtaatcacatgcagatgtgggtcattctgagaggactaaggtgccgcagtcttg 363

                                                                       
Query: 61  acgagcaggagcaacgacaatgctttctaccaacatgcatcaaatgcccactcgattcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 acgagcaggagcaacgacaatgctttctaccaacatgcatcaaatgcccactcgattcca 303

                                                                       
Query: 121 agaacggcggaggatttcacttgtggcacagtcaaaagtcggtgccgtaaaacctatggc 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 agaacgggggaggatttcacttgtggcacagtcaaaagtcggtgccgtaaaacctatggc 243

                                                     
Query: 181 tgtctctgggagtaaaaacagttatgccacctctggtttctc 222
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tgtctctgggagtaaaaacagttatgccacctctggtttctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 222
Length of database: 622
Length adjustment: 9
Effective length of query: 213
Effective length of database: 613
Effective search space:   130569
Effective search space used:   130569
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)