Query= MSMg01no368_o18.b1 MSMg01no368_o18.b1 CHROMAT_FILE:
MSMg01no368_o18.b1 PHD_FILE: MSMg01no368_o18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:30 2005
(611 letters)
>mm_chr6_99933217_99934227
Length = 1011
Score = 1046 bits (541), Expect = 0.0
Identities = 592/611 (96%), Gaps = 5/611 (0%)
Strand = Plus / Plus
Query: 5 gaattcctctagttcctccaagagagaaggtttcaatttagaagaagggactgagtaata 64
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 205 gaattcctctagtgcctccaagagagaaggtttcaatttagaggaagggactgagtaata 264
Query: 65 caagatacagcagccacagcctcgctctctcaaacaggcaggaccttggaaggaaaagga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caagatacagcagccacagcctcgctctctcaaacaggcaggaccttggaaggaaaagga 324
Query: 125 aggggcttgccccaagctggttgtaaatccaggcaaacccaagctggttcgggacccggc 184
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct: 325 aggggcttgccccaagctggttgtaaatccagtcaaacccaagctggttcaggacc-ggc 383
Query: 185 tcttggctctaccctccgggttcatggctcactctcagagtcttccttccttcct----c 240
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
Sbjct: 384 tcttggctctaccctctgggttcatggctcagtctcagagtcttccttccttccttcctc 443
Query: 241 gggaaggacagcatgactttcagttgtcataaaacgtggatgaaaagcaacttggggagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gggaaggacagcatgactttcagttgtcataaaacgtggatgaaaagcaacttggggagg 503
Query: 301 aaagacattatttggcttacagttcacctttgagggaaggcaggacgggagggaatgtgc 360
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 504 aaagacattatttggcttacagttcacctttgagggaagacaggatgggagggaatgtgc 563
Query: 361 tcaagtgggcgcatcaggaaccgcggagtgcggattactgctttgctcctcatggcttgc 420
||||||||| | |||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 564 tcaagtgggtgtatcaggaaccacggagtgcggattactgatttgctcctcatggcttgc 623
Query: 421 tcagataactttcttctataacccaggatcacctgcctggggatggcaccacccacccct 480
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tcagataactttcttttataacccaggatcacctgcctggggatggcaccacccacccct 683
Query: 481 tccacatcaacaatcactcaacaaaatgtcccacagacatgcctatgggcaaatttgatg 540
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tccacatcaacaatcagtcaacaaaatgtcccacagacatgcctatgggcaaatttgatg 743
Query: 541 gagataattcctcaatcaaggttccctcttcccaggtgactctagtttgtgccaagttga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gagataattcctcaatcaaggttccctcttcccaggtgactctagtttgtgccaagttga 803
Query: 601 caaaaactaac 611
|||||||||||
Sbjct: 804 caaaaactaac 814
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space: 601601
Effective search space used: 601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no368_o18.g1 MSMg01no368_o18.g1 CHROMAT_FILE:
MSMg01no368_o18.g1 PHD_FILE: MSMg01no368_o18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:30 2005
(506 letters)
>mm_chr6_100119129_100120034
Length = 906
Score = 663 bits (343), Expect = 0.0
Identities = 381/397 (95%), Gaps = 8/397 (2%)
Strand = Plus / Minus
Query: 1 agtcctagagtgtgaggaagtagcctggagtggcaggtgttgtcagctctgcttcgattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 397 agtcctagagtgtgaggaagtagcctggagtggcaggtgttgtcagctctgcttcaattc 338
Query: 61 ttaggctgccctgcttgctgtacacagcgtggcttttgctgctatcctggggtctttgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ttaggctgccctgcttgctgtacacagcgtggcttttgctgctatcctggggtctttgtg 278
Query: 121 ctttcagattatttgaacacagaagtgagcccagttttgatagagtaggctgcagtgagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ctttcagattatttgaacacagaagtgagcccagttttgatagagtaggctgcagtgagc 218
Query: 181 accaagatgaacatcctggggttggagaagtggtgcggtggctgtgagcttttacagctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 217 accaagatgaacatcctggggttggagaagtggtgcggtggctgtgagcttttacggctc 158
Query: 241 tttttgaagaccttcgtctggcttccagcatcctcattgagcacttacaattgcctttaa 300
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 tttcagaagaccttcgtctggcttccagcatcctcattgagcacttacaattgcctttaa 98
Query: 301 ctctagcctaggggatctgatacccttttctggccaccccgc-caacagtacttatgttc 359
||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||
Sbjct: 97 ctctagcctaggggatctgatacccttttctggtcaccaagggcaacagtacttatgttc 38
Query: 360 accccccc-----a--tacacacaattaaaaataaaa 389
|||||||| | |||||||||||||||||||||
Sbjct: 37 accccccccccccacctacacacaattaaaaataaaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space: 444416
Effective search space used: 444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
